F25551

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25551

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25551

Determination of introduced cDNA(s)

  • RAFL09-62-G09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-62-G09 - Resource: pda09868

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-62-G09 - full reading 
    GAGGATACCA AATTGAATGC TTTACCAAAC TCACATAACC ATCTCTTCTT 
    GACCCTTTTC TTTAATCTTT AATCTCTTTC TTCTTCTTCT TCTTCTTCTT 
    CTTCTCGCCA CCGCTCCTTC CTCCCTCCTT CTCTCTGTAT CAGTTTTTTT 
    CTCGATAGGA AAATGGAACA AGCCGCGTTG AAGAGCAGCG TCAGGAAAGA 
    GATGGCTCTC AAAACGACTT CTCCGGTTTA CGAAGAGTTT CTTGCCGTCA 
    CCACCGCTCA AAATGGCTTT TCCGTCGACG ATTTCTCTGT AGACGACTTG 
    CTTGACTTGT CAAACGATGA CGTTTTTGCC GACGAAGAAA CTGACCTCAA 
    GGCTCAACAT GAGATGGTCC GTGTTTCCTC TGAGGAACCC AACGACGACG 
    GAGACGCTCT TCGCCGGAGC AGCGATTTCT CCGGCTGTGA CGACTTTGGT 
    TCTCTCCCTA CAAGCGAACT CTCTCTTCCG GCGGATGATT TAGCGAACCT 
    TGAGTGGCTC TCTCATTTCG TGGAGGACTC CTTCACGGAA TATTCGGGTC 
    CAAACCTCAC CGGAACCCCG ACTGAGAAAC CGGCGTGGTT AACGGGTGAC 
    CGGAAACATC CTGTGACTGC AGTCACGGAA GAGACCTGTT TCAAATCCCC 
    TGTTCCGGCT AAAGCCCGTA GCAAACGTAA CCGCAATGGC CTCAAGGTCT 
    GGTCGCTTGG TTCGTCGTCC TCCTCGGGTC CTTCCTCGTC CGGTTCGACC 
    TCCTCCTCCT CTTCGGGTCC TTCCAGCCCG TGGTTCTCCG GCGCTGAGCT 
    GCTCGAGCCT GTGGTCACGT CAGAGAGGCC ACCGTTTCCC AAGAAGCATA 
    AGAAAAGGTC AGCCGAGTCT GTTTTCTCCG GTGAGCTGCA GCAGCTGCAA 
    CCTCAGCGAA AGTGCAGCCA CTGCGGCGTT CAGAAAACTC CGCAGTGGAG 
    AGCCGGGCCA ATGGGAGCCA AGACCCTGTG CAATGCGTGC GGTGTCCGGT 
    ACAAGTCGGG TAGGTTGCTA CCGGAATACA GACCCGCTTG TAGCCCGACA 
    TTCTCGAGTG AGCTGCACTC GAACCACCAC CGGAAAGTCA TAGAGATGAG 
    GCGGAAGAAG GAGCCAACCA GTGACAACGA AACCGGTTTA AACCAGCTGG 
    TTCAGTCCCC ACAAGCTGTA CCAAGTTTTT GAAGAAATAG GGCCTTAATT 
    AGAGCAGAGA TTTAGGATCC GAACCGGTTC AGTTGTTAGC CCCAAGTTAG 
    TTTCTCATTG ACTTGTTTCT TTGTATATTA CTTTCATTAT TTTTAGCATT 
    TACTTTTTTT TTGTTACAGT AGTTTGATTT TTCATGCTAG GAGTATCCGT 
    AAGTTCTTAG TAACTGATTA GGTCAAAAAC TCGTTTGTAT TGTACTCTTT 
    CGCGTTAATT TTTTCAGTTT AAATTTCCCC ATTT

    Gene models with high sequence identity

    1. AT5G66320.1 [+] show detail - GATA transcription factor 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Zinc finger, GATA-type 0
    superfamily Glucocorticoid receptor-like (DNA-binding dom 1.7e-18
    Gene3D Zinc finger, NHR/GATA-type 0.00012
    HMMPIR Transcription factor, GATA, plant 3.8e-210
    HMMPanther gb def: Transcriptional regulatory protein GA 8.7e-05
    HMMPanther TRANSCRIPTION FACTOR GATA (GATA BINDING FACTO 8.7e-05
    HMMPfam Zinc finger, GATA-type 3.6e-16
    Coil coiled-coil 0
    HMMSmart Zinc finger, GATA-type 1.6e-15
    ProfileScan Zinc finger, GATA-type 11.793

    See the detailed result >

    AT5G66320.1

    Model type
    Protein coding
    Short Description
    GATA transcription factor 5
    Curator Summary
    Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
    Computational Description
    GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR