F25623

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25623

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25623

Determination of introduced cDNA(s)

  • RAFL09-68-L04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-68-L04 - Resource: pda06626

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-68-L04 - full reading 
    AGATGCTTTA AATTCTAGAA AATAATGCAA TCTCTTACCT TAACTCGGTA 
    CCCAACTCCA ATTTCCCCGC CAAGACTCAA TCTTTACCCG CTAAGACAAA 
    TCGCAGCTTC TGTTCTCTCT GCTCCGACCG CCGGTATTAA CCGTCGCGAT 
    ATGGCGTCTC GCCATCAGTC AACTTCCTTT AAGCCCCTTG CCGTTGGTCG 
    GAATTTGACC GGAGATGATG ATGATGGTTA CTGTACTCTT ATAGACTTTG 
    CAGGTAGTGG AGGAGGAGAA GGGAAAAATG TAGGAGAGGA TCTTGTGGTG 
    TTGCTTTACC ACTTACAACA TGCTTGCAAA AGAATCGCTT CTCTTGTCGC 
    CTCTCCTTTC AATTCTTCAC TCGGAAAGCT CTCTGTTAAC TCCTCTAGTG 
    GGTCAGACCG AGATGCGCCT AAGCCGCTCG ATATTGTCTC GAACGATATC 
    GTCTTGTCCT CTCTTAGAAA CTCAGGGAAA GTAGCAGTAA TGGCTTCTGA 
    AGAAAACGAT AGTCCAACTT GGATCAAAGA TGATGGTCCT TACGTTGTGG 
    TTGTAGATCC TCTAGATGGA TCACGGAACA TCGATGCTTC GATTCCCACG 
    GGAACTATAT TTGGAATTTA CAATCGTCTC GTTGAGCTTG ATCATTTACC 
    TGTTGAAGAG AAAGCTGAGC TCAATTCTTT GCAGAGAGGC AGCAGGCTTG 
    TAGCTTCCGG TTATGTGCTA TACTCTTCAG CCACTATCTT CTGTGTTACA 
    CTTGGATCGG GAACACACGC CTTCACGCTA GACCATTCCA CAGGAGAATT 
    TGTTCTTACC CATCAAAACA TCAAGATCCC AACTCGGGGA CAAATCTACT 
    CAGTGAACGA TGCGAGGTAC TTTGATTGGC CAGAAGGTTT AAGGAAGTAC 
    ATTGACACAG TGAGACAAGG CAAAGGTCAA AACCCGAAAA AATACTCTGC 
    GCGTTATATT TGTTCTCTAG TAGCTGATCT TCACAGGACT CTCTTATACG 
    GTGGAGTGGC TATGAATCCA AGAGACCATC TTCGTTTAGT CTATGAAGGT 
    AACCCTTTGG CTTTTCTCGT GGAGCAAGCT GGTGGCAAAT CCTCTGATGG 
    AAAAAGAGGG ATACTTTCGA TACAACCCGT GAAGCTTCAC CAAAGATTGC 
    CTCTGTTTCT TGGGAGCTTA GAGGATGTTG CTGAGCTAGA GAGCTATGGA 
    GATGTGCAGC AGACTGTGAA CCCTGGCTAT GAAGTTTAAA CAACTCCTCT 
    GTTTCATATT ATCTGTAAAA ACAATAAATG AATCGATGTT AGATTTGGTT 
    GCTTGTAACA TTATGTATTA GGAAAGTTAG ATCCGTGTAT ATATCTGTTT 
    ATC

    Gene models with high sequence identity

    1. AT5G64380.1 [+] show detail - Inositol monophosphatase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Fructose-1,6-bisphosphatase 7.5e-93
    FPrintScan Fructose-1,6-bisphosphatase 2.6e-45
    FPrintScan Fructose-1,6-bisphosphatase 2.6e-45
    FPrintScan Fructose-1,6-bisphosphatase 2.6e-45
    FPrintScan Fructose-1,6-bisphosphatase 2.6e-45
    FPrintScan Fructose-1,6-bisphosphatase 2.6e-45
    HMMPanther FRUCTOSE-1,6-BISPHOSPHATASE 6.2e-144
    HMMPanther Fructose-1,6-bisphosphatase 6.2e-144
    Gene3D no description 2e-46
    Gene3D no description 3.3e-40
    superfamily Carbohydrate phosphatase 8.5e-84
    HAMAP Fructose-1,6-bisphosphatase 33.617

    See the detailed result >

    AT5G64380.1

    Model type
    Protein coding
    Short Description
    Inositol monophosphatase family protein
    Computational Description
    Inositol monophosphatase family protein; FUNCTIONS IN: phosphoric ester hydrolase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fructose-1,6-bisphosphatase (InterPro:IPR000146); BEST Arabidopsis thaliana protein match is: high cyclic electron flow 1 (TAIR:AT3G54050.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR