F25640

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25640

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25640

Determination of introduced cDNA(s)

  • RAFL05-09-D05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-09-D05 - Resource: pda00932

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-09-D05 - full reading 
    AAAGGAAGCG CCTTTTTCTC TCCTCCATCG TAATTCGCAG AGAAGACACA 
    CTACATTGAC TGAGAGGGAA CAAACACAAA GCGATGTCGC AACTCTTATC 
    GACTCCTCTA ATGGCGGTCA ACTCCAATCC TCGCTTTCTC TCTTCGTCTT 
    CAGTACTCGT CACCGGAGGT TTTGCAGTGA AACGGCATGG ATTCGCCTTG 
    AAACCGACGA CGAAGACGGT GAAGCTCTTC TCGGTTAAGT CTCGCCAGAC 
    GGATTACTTC GAGAAGCAGA GGTTCGGTGA CTCTTCTTCT TCTCCTTCAC 
    CTGCTGAAGG ATTGCCTGCT AGATTTTACG TGGGTCATTC GATATACAAA 
    GGGAAAGCTG CGTTAACAGT GGACCCAAGA GCACCAGAGT TTGTGGCTTT 
    AGACTCTGGA GCTTTCAAGT TGTCAAAAGA TGGTTTCTTA TTGCTCCAGT 
    TTGCTCCTTC TGCTGGTGTA CGACAATATG ATTGGAGCAA GAAACAGGTG 
    TTCTCATTGT CTGTTACAGA AATTGGAACT CTAGTTAGCC TAGGCCCGAG 
    GGAATCTTGT GAATTCTTCC ATGATCCATT CAAGGGGAAA AGTGATGAGG 
    GAAAAGTAAG GAAAGTGTTG AAAGTTGAGC CTCTCCCAGA TGGTTCTGGT 
    CATTTCTTCA ACCTAAGTGT TCAAAACAAG CTTGTGAATG TGGATGAGAG 
    CATTTACATA CCAATTACTC GAGCAGAGTT TGCTGTTCTT ATCTCTGCAT 
    TCAATTTTGT CTTGCCTTAC CTTATAGGCT GGCATGCATT TGCAAACTCC 
    ATCAAACCAG AAGAGACAAG CCGTGTGAAC AACGCTTCGC CTAACTATGG 
    AGGAGACTAT GAATGGAATA GATGATGAAT CTTAGGGCCA TAACAGGAAC 
    ATATATCAGA GATCATCCTA CCCTTTTTGT TTTGCTGATA GGTTTCGTCA 
    GGATTGATAT ATGTTCGTAG GTAGCAGAAG AGACTAAAAG TAGTTTATTT 
    TTTCGTCCTT TTGACCAAAT GTTCAAAAGC CACATATCAT TTCGTGGTAA 
    GCGGTTGTAT CTCAAAACAT CAGTCTGATC TTAGTTGTTT TTGATTTAAA 
    AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT1G14410.1 [+] show detail - ssDNA-binding transcriptional regulator
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Plant transcription factor 5.7e-67
    superfamily ssDNA-binding transcriptional regulator 6.5e-84

    See the detailed result >

    AT1G14410.1

    Model type
    Protein coding
    Short Description
    ssDNA-binding transcriptional regulator
    Curator Summary
    Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.
    Computational Description
    WHIRLY 1 (WHY1); FUNCTIONS IN: DNA binding, telomeric DNA binding; INVOLVED IN: negative regulation of telomere maintenance via telomerase, defense response; LOCATED IN: plastid chromosome, chloroplast, nucleoid, telomerase holoenzyme complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Plant transcription factor (InterPro:IPR013742); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT2G02740.2); Has 106 Blast hits to 105 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR