F25643

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25643

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25643

Determination of introduced cDNA(s)

  • RAFL04-20-B02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-20-B02 - Resource: pda00596

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-20-B02 - full reading
    ACAGAAACCA AACCAAGAGC CGGAAATCAA AAACAGTAAT AAAAGATCAA 
    CTGCAAGAAA ATGGCTCTTC CTCTCGAGCT CGAAAGCCTC ACTGAAGCCA
    TCTCAGCTGG GATGGGAATG GGAGTTGATG AGAATGCATT GATAAGCACA
    CTGGGGAAAT CGCAAAAGGA ACATAGAAAA TTGTTTAGGA AAGCAAGCAA
    AAGTTTCTTT GTTGAAGATG AGGAAAGAGC TTTTGAGAAA TGTCATGATC
    ACTTCGTCAG ACACCTCAAG CTTGAGTTCT CCCGCTTCAA TACTGCGGTG
    GTGATGTGGG CAATGCATCC ATGGGAGAGA GATGCAAGGT TGGTGAAGAA
    AGCTTTGAAG AAAGGAGAAG AAGCTTACAA CCTCATCGTT GAGGTCTCAT
    GCACACGCTC TGCTGAGGAT CTCCTCGGTG CACGTAAAGC TTACCACTCT
    CTCTTCGACC AATCAATGGA AGAAGACATT GCCTCTCACG TCCACGGTCC
    TCAGCGCAAG TTGCTTGTGG GGCTCGTGAG TGCTTATAGA TACGAAGGAA
    ATAAGGTGAA GGATGATTCT GCCAAATCCG ATGCTAAGAT TCTAGCCGAA
    GCAGTGGCTT CTTCAGGCGA AGAAGCCGTG GAGAAGGATG AGGTTGTTAG
    GATTTTGACC ACAAGAAGCA AACTTCATCT CCAACATCTC TACAAACACT
    TTAACGAAAT CAAAGGCTCT GATCTTCTTG GGGGTGTATC TAAGTCTTCT
    CTTCTCAATG AAGCATTGAT TTGTTTGCTC AAACCGGCTC TGTATTTCAG
    CAAGATTTTG GATGCGTCTC TGAACAAAGA CGCAGACAAG ACTACCAAGA
    AATGGTTGAC AAGAGTGTTC GTTACAAGAG CAGATCATAG TGATGAGATG
    AATGAGATCA AAGAAGAGTA CAATAACCTT TATGGTGAGA CTTTGGCTCA
    AAGAATCCAA GAGAAGATAA AAGGGAACTA CAGAGATTTC TTGCTCACAC
    TTCTCTCCAA ATCCGATTGA TTTCGTGTTG AGAAACCTAT TACCAATACT
    TTTGGTTATT GAAGATTTAT GATTTCCCTT TTTATGGTTT TATGTTTCTA
    ATTCCTAAAT TTGCGTTTTC TCTACCGTTT GGTAATAAAG ACATGAAAAT
    TTGATGAACT CGGTGAATCG AGAGTAAGAG TTTTGCGATT GTGACAATGA
    GTGATTAATA CAAGGATTAA GCTCCAAT

    Gene models with high sequence identity

    1. AT2G38750.1 [+] show detail - annexin 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Annexin 2.8e-07
    FPrintScan Annexin 2.8e-07
    FPrintScan Annexin 2.8e-07
    FPrintScan Annexin 2.8e-07
    HMMPfam Annexin repeat 1.3e-11
    HMMPfam Annexin repeat 1.4e-06
    HMMPfam Annexin repeat 3.7e-10
    HMMPanther Annexin like protein 2e-127
    HMMPanther Annexin 2e-127
    superfamily Annexin 4e-63
    Coil coiled-coil 0
    Gene3D Annexin repeat 9.8e-15
    Gene3D Annexin repeat 7.9e-09
    HMMSmart Annexin repeat 5.9e-05
    HMMSmart Annexin repeat 0.0023

    See the detailed result >

    AT2G38750.1

    Model type
    Protein coding
    Short Description
    annexin 4
    Curator Summary
    Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis.
    Computational Description
    annexin 4 (ANNAT4); FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; INVOLVED IN: in 6 processes; LOCATED IN: cell surface; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin (InterPro:IPR001464); BEST Arabidopsis thaliana protein match is: annexin 8 (TAIR:AT5G12380.1); Has 2371 Blast hits to 2094 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 1728; Fungi - 90; Plants - 415; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR