F25722

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25722

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25722

Determination of introduced cDNA(s)

  • RAFL09-93-F19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-93-F19 - Resource: pda06981

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-93-F19 - full reading 
    AACTTTAGCC CCAAATTAGA GAGAGATGCA GAAACGGGAG CTTGGGAAAT 
    CCGGCGGTAA TTCCGGTGGA TCTTCGGGTC CACCAGCGAA GAGAGGCCGT 
    CCCTTCGGTA GTACAAGTGC TAACTCAGCT GCTGCTGCTG CAGCGGCGGC 
    AGCAGCGGAC GCGATGTCAC CGTCAGCTTT ACTTGGTCCT TCTCTTCTAG 
    TTCACAATTC CTTCGTCGAG CAGAACAATA GAAGAATAGT TCTTGCGTTG 
    CAGAGTGGTT TGAAGAGTGA GGTGACATGG GCATTGAACA CACTTACGTT 
    GCTTTCCTTC AAGGAAAAAG AAGATATTCG AAGAGATGTC ATGCCTCTTG 
    CTAAGATAGC TGGCTTGCTT GATGCCCTTC TCTTAATTAT AGATGATTGG 
    CGTGACATAG CTCTCCCAAA GGACCTGACA AGAGGGACTA GAGTTAGAAC 
    TTTAGGTACA AATGCTTCAG TTACGGGATT TGGCAATGAG TATGATGCTC 
    TAGCCTCTAT TCAACCCCCT GGATCCGGGA TTGGTTCTTC TGCTGCTGAG 
    GCATTAGGAA AAAAGAGCAC TGGTAAACAT CAGTCATCTC AGTGGTGGAT 
    GGAAGAGGAT GGTTTGTTTA ATCTAGACGA TGAAGGGAGA TCAGAGAAAC 
    AAATGTGTGC TATTGCTGCA TCGAACGTTA TCCGCAACTT CTCCTTCATG 
    CCTGATAATG AAGTTGTAAT GGCTCAGCAT CGCCATTGCT TAGAAACTGT 
    TTTCCAGTGC ATACACGATC ATATGACCGA GGATGAAGAG CTGGTCACAA 
    ACTCGCTAGA GACAATTGTA AACCTAGCGC ATTTGATGGA TCTTCGAATT 
    TTCAGCTCGC TTAAGCAGTC ATACATCAAC ATAAATGAAA AGAAAGCTGT 
    TCAAGCTGTG GTCGGAATCC TCAATTCTTC TGTCAAAGCT TGGAATTGTG 
    CTGCTGCTGA GTTGCTAGGG CGTTTGATAA TCAATCCGGA CAATGAACCT 
    TTCATTAGTC CTTTAATTCC GCAGATACAC AAGCGACTAA TCGATCTTTT 
    GAGCATACAA GCCGTTGATG CACAAGCTGC AGCTGTTGGA GCACTCTACA 
    ATCTCGTGGA AGTTAACATG GATTGCAGAT TAAAGCTAGC AAGTGAGAGA 
    TGGGCGGTTG ATAGGTTGCT GAAAGTGATA AAGACTCCGC ATCCGGTTCC 
    AGAAGTATGT AGGAAAGCTG CAATGATCCT TGAGAACCTT GTCTCGGAGC 
    CTCAAAACAG AGGATTGCTA CTCGCGTATG AGAATGCTTT CGCTGAGCTG 
    CTTTTTCAAG AGGGTAAGTA TTCTGATTCA TTTGCTAGGA TTTTGTATGA 
    ACTCACTGCT AGATCTAATA GCAGAGTTGC TTCAGCTAGA GGAATCTGGG 
    GCATGTAAAA GTCTTCTCTA GATTAGTGGG TTTGATTAAT TGATTGTGTT 
    GTAAACTTTA ATCATTTGCT ATGTATTAAA AAAGCAGTGT TGTTGAAAAA 
    AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT3G22990.1 [+] show detail - ARM repeat superfamily protein
      E-value: 0; Score: 99.87

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 2.8e-16
    HMMPanther BRG-1 ASSOCIATED FACTOR 250 (BAF250) 7.3e-07
    Gene3D Armadillo-like helical 1.9e-05
    ProfileScan Armadillo 9.432

    See the detailed result >

    AT3G22990.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Curator Summary
    Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues.
    Computational Description
    LEAF AND FLOWER RELATED (LFR); FUNCTIONS IN: binding; INVOLVED IN: flower development, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 69 Blast hits to 69 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 2; Plants - 25; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR