F25730

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25730

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25730

Determination of introduced cDNA(s)

  • RAFL06-74-C07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-C07 - Resource: pda03474

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-74-C07 - full reading 
    AAAGAAACGG TCTCAATCTT ATTTTCAGCG ATGGCGATGT CAATTCTAAA 
    GCTAAGAAAT TTATCGGCAC TAAGATCGGC GGCAAATAGT GCCCGGATCG 
    GAGTTTCATC GAGGGGTTTC TCAAAGCTCG CGGAAGGCAC TGACATAACC 
    TCGGCGGCGC CTGGCGTTTC TCTCCAGAAA GCTCGCAGCT GGGACGAAGG 
    TGTTTCCTCC AAATTCTCCA CCACGCCATT GTCAGATATC TTCAAGGGGA 
    AGAAAGTCGT CATCTTTGGT CTTCCTGGGG CTTACACGGG AGTTTGTTCA 
    CAGCAGCATG TGCCTAGCTA CAAGAGCCAC ATTGATAAGT TTAAAGCCAA 
    AGGCATTGAT TCTGTCATCT GTGTCTCTGT TAATGATCCC TTTGCTATCA 
    ATGGTTGGGC AGAGAAGCTT GGTGCCAAAG ATGCAATTGA GTTTTATGGA 
    GATTTTGATG GGAAATTTCA CAAAAGCTTG GGGCTAGACA AGGATCTCTC 
    TGCTGCATTG CTCGGGCCAC GGTCTGAGAG ATGGTCGGCT TATGTAGAAG 
    ACGGGAAGGT TAAGGCGGTG AATGTGGAAG AAGCACCGTC TGACTTCAAG 
    GTTACAGGGG CAGAAGTCAT CTTAGGACAG ATCTAAAAAG TATTTCCAGA 
    GTTGCTGTTT CTTCTGAGTT GCAACTGATA ATAAGTTTGA TCCGAACATG 
    TCTCAAGGAT CAGACCAAGT AACAGCTTCA CTTCTTTTGT TTTGTTTCCA 
    CAGTTTCAGT TTAAATAAAA CTTATGTGTC TTGCCGTTT

    Gene models with high sequence identity

    1. AT3G06050.1 [+] show detail - peroxiredoxin IIF
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Thioredoxin-like 11.092
    Gene3D Thioredoxin fold 9.9e-47
    superfamily Thioredoxin-like fold 1.3e-33
    HMMPfam Redoxin 3.3e-33
    HMMPanther PEROXIREDOXIN 2.1e-134
    HMMPanther PEROXIREDOXIN-5 2.1e-134

    See the detailed result >

    AT3G06050.1

    Model type
    Protein coding
    Short Description
    peroxiredoxin IIF
    Curator Summary
    Encodes a mitochondrial matrix localized peroxiredoxin involved in redox homeostasis. Knockout mutants have reduced root growth under certain oxidative stress conditions.
    Computational Description
    peroxiredoxin IIF (PRXIIF); FUNCTIONS IN: peroxidase activity, antioxidant activity; INVOLVED IN: response to oxidative stress, response to cadmium ion; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G60740.1); Has 3925 Blast hits to 3925 proteins in 881 species: Archae - 6; Bacteria - 1549; Metazoa - 168; Fungi - 305; Plants - 221; Viruses - 0; Other Eukaryotes - 1676 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR