F25802

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25802

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25802

Determination of introduced cDNA(s)

RAFL09-50-H11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-50-H11 - Resource: pda06454

full reading [+] show sequence

GTGAGAAGAG TTTATAATCT CGAGAAATCT TTTTGGGCGA CGTTGTTTGC 
TCGGAGCTCT TTCTCCGATT TGTCTCCATT TTCGGTGATT TAAAGTTAGG 
ATTTGGCTGT GGAGATGTCT TCACTTACCT CCGTCGAATT GAATTTTCTG 
GTTTTCCGAT ATCTTCAGGA ATCAGGGTTT ACACACGCTG CATTCACTCT 
AGGTTATGAG GCAGGGATTA ATAAATCCAA CATTGATGGG AATATGGTTC 
CACCTGGTGC TCTTATCAAA TTTGTTCAGA AAGGTCTTCA GTACATGGAG 
ATGGAAGCTA ATTTGAGCAA TAGTGAAGTG GACATTGATG AGGATTTCTC 
ATTCTTTCAA CCCTTGGATC TGATTTCAAA GGATGTAAAG GAACTGCAGG 
ATATGCTGAG GGAAAAGAAG AGGAAAGAGA GGGATATGGA GAAGGAAAGA 
GACAGATCTA AAGAAAACGA TAAAGGGGTT GAACGAGAAC ATGAAGGAGA 
TCGCAACCGA GCTAAGGAAA AGGATAGGCA CGAGAAGCAG AAGGAACGAG 
AGAGGGAAAG GGAAAAATTG GAACGTGAAA AGGAGAGGGA AAGAGAGAAG 
ATAGAACGAG AAAAGGAACG GGAAAGGGAG AAGATGGAAC GGGAAATATT 
TGAGAGGGAG AAGGATAGAT TGAAATTAGA GAAAGAAAGA GAAATAGAAC 
GGGAGAGGGA AAGAGAGAAG ATAGAGAGGG AAAAGAGCCA TGAAAAACAG 
CTTGGAGATG CTGATAGGGA AATGGTTATT GACCAAACTG ACAAAGAAAT 
TGCTGGGGAT GGTTCTACAG GCGCAGAACC TATGGATATT GTTATGACTC 
CCACATCTCA GACAAGTCAC ATTCCTAATT CTGATGTGAG GATTTTGGAA 
GGGCATACTT CTGAGGTTTG TGCTTGCGCA TGGAGTCCCT CAGCTTCACT 
TCTTGCGTCA GGGTCTGGTG ATGCAACAGC GCGAATCTGG AGTATTCCGG 
AAGGATCATT CAAAGCTGTG CATACTGGTC GTAATATCAA CGCTTTAATC 
CTGAAGCATG CAAAAGGCAA GTCAAACGAG AAGAGCAAGG ATGTGACCAC 
TCTTGACTGG AATGGTGAAG GGACTTTACT TGCAACTGGT TCATGTGATG 
GCCAAGCAAG AATCTGGACT TTAAATGGTG AACTGATAAG TACTCTTAGC 
AAACACAAGG GACCTATTTT TTCCCTTAAG TGGAACAAGA AGGGGGACTA 
TCTTCTAACC GGTAGTGTTG ATAGAACTGC TGTTGTTTGG GACGTAAAGG 
CAGAGGAGTG GAAGCAACAA TTTGAATTTC ATTCAGGTCC AACACTTGAT 
GTTGATTGGC GCAACAATGT ATCTTTTGCA ACGAGTTCCA CGGACAGCAT 
GATCTACTTA TGTAAGATTG GAGAAACTAG GCCTGCCAAA ACCTTTACTG 
GGCATCAGGG TGAGGTCAAC TGTGTGAAAT GGGATCCTAC TGGTTCATTA 
TTGGCCTCAT GCTCAGATGA TAGTACTGCT AAGATATGGA ATATAAAACA 
AAGCACCTTT GTTCATGACC TCCGAGAGCA TACTAAGGAA ATTTATACAA 
TCAGATGGAG CCCTACAGGA CCAGGAACTA ACAATCCTAA CAAACAGCTA 
ACTCTTGCAA GTGCATCATT TGACTCAACA GTAAAGCTAT GGGATGCAGA 
ACTCGGGAAG ATGCTCTGTA GTTTCAATGG ACACAGGGAA CCGGTTTACT 
CACTGGCGTT TAGTCCAAAC GGGGAGTACA TAGCGAGTGG GTCTTTGGAC 
AAATCGATAC ACATATGGTC GATTAAAGAA GGTAAAATCG TAAAGACATA 
CACAGGAAAT GGAGGGATAT TCGAAGTGTG TTGGAACAAA GAAGGTAACA 
AAATCGCAGC TTGCTTCGCT GATAACTCAG TTTGCGTTCT TGATTTCAGA 
ATGTAGTTTT CTTAATTGTA GTCCTAATAA CACTCTCTCA GTCCAAGGTG 
TTTCTTTTTG TTGTTGCACA TATCTATAAG TTATAACACT AAATTCG

Gene models with high sequence identity

AT5G67320.1 [+] show detail - WD-40 repeat family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	WD40 repeat-like-containing domain	2.3e-78
superfamily	WD40 repeat-like-containing domain	2.5e-13
PatternScan	WD40 repeat, conserved site	0
PatternScan	WD40 repeat, conserved site	0
PatternScan	WD40 repeat, conserved site	0
HMMPfam	WD40 repeat, subgroup	4.5e-11
HMMPfam	WD40 repeat, subgroup	3.9e-06
HMMPfam	WD40 repeat, subgroup	1e-07
HMMPfam	WD40 repeat, subgroup	4.8e-13
HMMPfam	WD40 repeat, subgroup	5.2e-09
HMMPfam	WD40 repeat, subgroup	3.5e-12
HMMPfam	WD40 repeat, subgroup	0.0092
HMMPfam	LisH dimerisation motif, subgroup	1.6e-08
Gene3D	WD40/YVTN repeat-like-containing domain	3e-15
Gene3D	WD40/YVTN repeat-like-containing domain	3.5e-69
HMMPanther	TRANSDUCIN BETA-LIKE 1	2.3e-267
HMMPanther	WD40 REPEAT PROTEIN	2.3e-267
FPrintScan	G-protein beta WD-40 repeat, region	3.3e-07
FPrintScan	G-protein beta WD-40 repeat, region	3.3e-07
FPrintScan	G-protein beta WD-40 repeat, region	3.3e-07
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMSmart	LisH dimerisation motif	4.5e-05
HMMSmart	WD40 repeat	2.9e-10
HMMSmart	WD40 repeat	0.0014
HMMSmart	WD40 repeat	2.4e-09
HMMSmart	WD40 repeat	9.5
HMMSmart	WD40 repeat	2.5e-12
HMMSmart	WD40 repeat	3.9e-08
HMMSmart	WD40 repeat	1.8e-11
HMMSmart	WD40 repeat	0.038
ProfileScan	WD40 repeat 2	15.087
ProfileScan	WD40 repeat 2	10.776
ProfileScan	WD40 repeat 2	14.151
ProfileScan	WD40 repeat 2	16.29
ProfileScan	WD40 repeat 2	10.241
ProfileScan	WD40 repeat 2	18.395
ProfileScan	WD40-repeat-containing domain	57.713
ProfileScan	LisH dimerisation motif	10.13

See the detailed result >

AT5G67320.1

Model type: Protein coding
Short Description: WD-40 repeat family protein
Curator Summary: Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing.
Computational Description: high expression of osmotically responsive genes 15 (HOS15); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR