F25806

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25806

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25806

Determination of introduced cDNA(s)

  • RAFL04-16-A04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-A04 - Resource: pda00579

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-16-A04 - full reading 
    ACGAACGCAT CTCATTGCTT CATCATTACC AAATCATCAA CTTAATCGTT 
    TCTCTCAAAT TTAGGGTTTT CTCTTTTCTC GAAAGTCTTG CGGTTTTCTG 
    AATCATCTCT ATCTGGTTTG AGGGTTTCGT TTGATATCTG GAGAAAGGGG 
    TTTCTGGAAA CAAGGAGTTC ATAATTCGCG ATCTTGATCT ATCGATCTTC 
    ATTTATATAT AAAAGCGTGA ATGAGATTAT GATGGAGTCG AAAGGTGGTA 
    AAAAGAAGTC CAGCAGTAGT AGTTCCTTAT TTTACGAAGC TCCCCTCGGT 
    TACAGCATTG AAGACGTTCG TCCAAACGGT GGAATCAAGA AATTCAAATC 
    TTCTGTCTAC TCAAACTGCT CCAAGAGGCC ATCCTGAGTA CCAGCGTGCA 
    CCGATCTTCA TAATATAGTT ATAGCTTTCT TTACTTTCCA GTTTATAATT 
    TTCTTCTTTC AAAGCTCCTT TTCTGCTGGT TCCCGGATCC AATCGTTCTC 
    TCCTCCTACT ACAAGTCCTG TCGCTCACAC AACAAGGCGA GATGGCCTTA 
    TCTGCAATCG GTTTCGAAGG TTACGAGAAA CGGCTCGAGG TGACTTTCTT 
    TGAGCCAAGC ATCTTTCAAG ACTCCAAGGG ACTGGGACTC CGTGCTCTGA 
    CCAAGTCCCA GCTTGATGAA ATTCTTACAC CTGCTGCATG CACGATCGTT 
    TCATCTCTCT CCAACGATCA ATTGGACTCT TACGTACTCT CTGAGTCCAG 
    CTTCTTTGTC TACCCCTACA AAGTCATCAT CAAGACTTGC GGTACCACTA 
    AGCTCCTCCT CTCTATCCCA CCACTTCTAA AGCTGGCTGG TGAGCTCTCT 
    CTGAGTGTCA AGTCTGTGAA GTACACTCGC GGCTCCTTCC TCTGCCCCGG 
    AGGCCAGCCT TTTCCTCACC GCAGCTTCTC TGAAGAAGTC TCTGTTCTTG 
    ATGGGCACTT TACTCAGCTG GGCTTGAACA GCGTAGCCTA CTTGATGGGC 
    AATGATGATG AGACTAAGAA ATGGCATGTC TATGCTGCCT CTGCCCAGGA 
    CTCCAGCAAC TGCAACAACA ATGTCTACAC TCTCGAGATG TGCATGACTG 
    GTCTGGACAG AGAGAAAGCT GCTGTCTTCT ACAAGGATGA AGCTGACAAG 
    ACTGGGTCAA TGACTGATAA CTCTGGAATC AGAAAGATCC TTCCCAAGTC 
    TGAGATCTGC GACTTTGAAT TCGAGCCCTG CGGCTACTCT ATGAACTCAA 
    TTGAAGGGGA TGCAATCTCC ACGATCCATG TGACCCCTGA AGATGGGTTT 
    AGCTACGCTA GCTTCGAAGC TGTGGGTTAC GACTTCAACA CCCTTGACCT 
    TAGCCAGCTG GTGACAAGGG TTCTCTCTTG CTTCGAGCCC AAGCAATTCT 
    CTGTAGCTGT GCACTCGAGC GTTGGAGCGA ACTCATACAA GCCAGAGATT 
    ACTGTAGACT TGGAAGACTA TGGGTGCAGA GAGAGGACAT TTGAGTCTCT 
    AGGAGAAGAG AGTGGAACAG TGATGTATCA GACGTTTGAG AAGCTTGGTA 
    AGTACTGTGG ATCGCCTAGA TCTACCTTGA AGTGTGAATG GAGCAGCAAC 
    AATAGCTGCA GCAGCGAGGA CGAGAAGGAC GAGGGAATCT AGCAGAATTT 
    TTCTTCCTAA TAACTATTTT CGAGCTTTCT GTTTTTGTTC TTTCTTTTTA 
    AAAAACTTAT TAAGTTCTTA TGAATAATGA CTTGTGAAGT TTGAGTTCGT 
    CTCCTTCACA AGCAAGTTGT ATTGGTGTTT TCTACTTTAT GAATATGGGT 
    TTTATATACC TAAAGACTTG TTATGTTATT ATTCTTAAAT GTTGCTGCTA 
    TGATGATTAC TATTATCGAT TTTTAC

    Gene models with high sequence identity

    1. AT3G02468.1 [+] show detail - conserved peptide upstream open reading frame 9
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr S-adenosylmethionine decarboxylase subgroup 8.5e-135
    HMMPfam S-adenosyl-l-methionine decarboxylase leader peptide 3.1e-33
    HMMPfam S-adenosylmethionine decarboxylase 1.1e-138
    superfamily S-adenosylmethionine decarboxylase, core 3.7e-128
    HMMPIR S-adenosylmethionine decarboxylase subgroup 3.5e-124
    PatternScan S-adenosylmethionine decarboxylase, conserved site 0
    Gene3D S-adenosylmethionine decarboxylase, core 7.1e-118
    HMMPanther S-adenosylmethionine decarboxylase 1e-147

    See the detailed result >

    AT3G02468.1

    Model type
    Protein coding
    Short Description
    conserved peptide upstream open reading frame 9
    Curator Summary
    Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF9 represents a conserved upstream opening reading frame relative to major ORF AT3G02470.1
    Computational Description
    conserved peptide upstream open reading frame 9 (CPuORF9); CONTAINS InterPro DOMAIN/s: S-adenosyl-l-methionine decarboxylase leader peptide (InterPro:IPR012511); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 10 (TAIR:AT5G15948.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR