F25841

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25841

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25841

Determination of introduced cDNA(s)

  • RAFL06-12-J05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-12-J05 - Resource: pda03114

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-12-J05 - full reading 
    TAAGAGACAG AGAGATCTTA ACACAAAACA AAGCAAACAC CAAAAAAAAC 
    AGAGATGGGT TTGGTTACAG ATGAAGTGAG AGCTAGGGCA GAGAAATACA 
    CAGGAGATGA GATATGCCGT GAGAAGACAA AGGAGTTTCT CAAGGAAGTT 
    TCTATGCCTA ATGGTTTATT GCCATTGAAG GACATTGAAG AAGTTGGTTA 
    CGACAGAGAG ACAGGTATTG TCTGGCTGAA GCAGAAGAAG AGCATCACCC 
    ACAAGTTTGA AGCCATTGGT AAACTTGTCT CTTACGCCAC CGAGGTCATT 
    GCACAGGTGG AGGTCGGAAA GATCAAGAAG CTTACCGGTG TTAAGGCCAA 
    GGAGCTTCTT ATTTGGGTCA CTCTCAATGA GCTTGTCTTG GAGCAGCCGA 
    CAAGTTCAGG GAAGATCAAT TTCAGGACAC CAACTGGTCT GTCCAGGACT 
    TTCCCAGTGT CTGCTTTCGT TGTTCCTGAA GTTGAGAAGC CTGCAACGGA 
    GAAGAACAAT GGAACCACTG AGGTCAAAGA AGCTGTTGCA GTCACAGATG 
    CTTAGTCTCT CTAATCTTAT TAATCTTATC CTTCCAATCA TGAATTACTT 
    TCTGCTATTT GCTGCTTAAT TTCCTTTTAT CAATAAGATG ATACAATTTC

    Gene models with high sequence identity

    1. AT1G56580.1 [+] show detail - Protein of unknown function, DUF538
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Protein of unknown function DUF538 1.2e-14
    HMMPfam Protein of unknown function DUF538 2.5e-25

    See the detailed result >

    AT1G56580.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF538
    Curator Summary
    Encodes SMALLER WITH VARIABLE BRANCHES (SVB), a protein with a conserved domain of unknown function (DUF538). The trichomes of the SVB mutants are smaller and exhibit branches of variable length and number.
    Computational Description
    SMALLER WITH VARIABLE BRANCHES (SVB); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT1G09310.1); Has 365 Blast hits to 365 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 365; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR