F25842

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25842

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25842

Determination of introduced cDNA(s)

  • RAFL05-10-D11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-10-D11 - Resource: pda00985

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-10-D11 - full reading
    AGGAAGCCCT AAATTTGGAT TCTCTATTCT AAAGTTTTCT CATTTCGCTA 
    ATTTTGGAGA AAAACGATTG TTTTTTTTAA TCGTTTCTTC ATTTCTGATT
    CATTTTTCTT GGTTTATGAT CTGTTCAAGT AAAGGAACAA TCTTAATCGC
    TAGAGGTAAA AATTCAAATA CAATCCCTAG ATTACCCCTA AAAGGGTCAT
    CCACAAATTA CGCGAATCGA ATTCAAATTC GAAACCCAAT CAGTGTCAAA
    ACTTTCCGGC GATCATCTTC ATCGTCAATG GCGGTGGAAA CAATGTCGAT
    GGGATCAGAT TCATCAACTT TGATTCTAAC ATCAGGAGCA AGCGGTCGCG
    TTAGGGTACT CTTCTCGATG CGAGAGCTTA AGCGTCTCGT TACGATTATC
    CAATCGTTGA TTCTTTTCCT CCTCCTTCCG TTTCGCGTCG TCGTTTGGCG
    GCGGAGGACT GGTGCGGTGG TTATCAGAGA CGATAAGCAA GAGAGGAAGG
    TTTGGTCTCC TCCGCAGATC GTGGTGAGGA AGAGGAACAT CGGTGGCGAA
    AGCAGCGTTT CTCCTCCGTC GGTTCCAGCT GCGGTGGTGG ATGGGGAGGT
    TGCTGTTCGA CGTGAACTGG CGATTAAGCG AGTTTTGGAG GATGAAGGCG
    GCGATGGAAG CTCCGTCAGA GATTATTCGC TATTCACGAC GAAGAGAGGA
    GATACGTTGT TTAGTCAGTC ATGGTCACCT CTTTCCCCAA ATCACAGGGG
    ACTTATTGTT CTGCTACATG GATTAAACGA GCATAGTGGC AGGTATAGTG
    ATTTTGCAAA GCAGCTTAAT GCTAATGGGT TCAAGGTCTA TGGAATTGAC
    TGGATCGGTC ATGGCGGAAG TGATGGACTT CATGCTTACG TTCCTTCCCT
    TGATTACGCT GTCACAGATT TGAAATCATT TCTTGAAAAG GTATTCACAG
    AGAATCCAGG ACTCCCCTGT TTCTGCTTTG GACACTCAAC AGGTGGAGCA
    ATCATCCTCA AGGCTATGCT GGATCCAAAG ATTGAATCTC GAGTTTCAGG
    CATTGCATTG ACTTCACCAG CTGTTGGAGT CCAACCATCC CATCCAATCT
    TCGCTGTTCT TGCTCCAATC ATGGCGTTTC TACTACCCAG GTACCAAATC
    AGTGCAGCAA ACAAGAAAGG AATGCCGGTT TCTCGTGACC CAGCAGCTCT
    CATCGCCAAA TACTCTGACC CATTAGTCTT CACCGGATCC ATCCGGGTTA
    AAACCGGCTA CGAGATCCTT AGAATCACTG CTCACTTGCA ACAGAACCTG
    AACAAAGTGA AAGTTCCCTT TCTTGTGATG CACGGTACTG ACGACACAGT
    TACCGATCCT AGCGCCTCAA AGAAGCTCTA CGAGGAAGCT GCCTCGTCAG
    ACAAATCACT CAAGCTCTAC GACGGGTTGT TGCACGATCT TCTTTTTGAA
    CCCGAACGAG AAATCATCGC TGGAGCCATA TTAGATTGGC TAAACCAGCG
    GGTTTAGCTC GTTCAAACCA ACAATCACTA TCGCATCGAA TCAAGAGATT
    CTTGATTCAG ACAAGAATAA TTAATTCGCG GAATTTTCTG AGTGTGTTGA
    CTGAGAAACG TGAGGAAAAA GAAGTTCTTG GTCGAATTTT CTCAACTCAG
    AAGTAGAAGG AAGATAAGAG AAAAAGAGAG ACTCCAAATC TGGACTCTCT
    TGCTATGCTT CTTGACGTCG GTATATTGTT ATAAATCAAT AATTTTGTAA
    CCTTGGATTT TAATATCTTA TACCTGTAAT ACCAATTATT ATTTATATCG
    AAACTATATA TGATTTTGGC GAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT1G73480.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Hydrolase_4 9.3e-27
    Gene3D no description 5.8e-30
    Coil coiled-coil 0
    superfamily alpha/beta-Hydrolases 4.7e-49
    HMMPanther LYSOPHOSPHOLIPASE 1.5e-144
    HMMPanther PHOSPHOLIPASE-RELATED 1.5e-144

    See the detailed result >

    AT1G73480.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G18360.1); Has 6390 Blast hits to 6380 proteins in 1730 species: Archae - 36; Bacteria - 4672; Metazoa - 140; Fungi - 153; Plants - 452; Viruses - 63; Other Eukaryotes - 874 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR