F25844

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25844

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25844

Determination of introduced cDNA(s)

  • RAFL09-49-I18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-I18 - Resource: pda06419

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-49-I18 - full reading 
    GGTAAATTTC TGCTCTAACT TTTTTTTTTT CATCATCTTT TTGGTTTCGC 
    CAATAATGGA ACTCTTCTTC CACCATTTTC CTGGAAAATC TCGGTATCGA 
    GAAGATGAAT CCCTAGACAG ATAAATCTAG AATCACTCAA ATCTCTGCTC 
    TTCTTCCGAT TCAGATCGTA TCGAATTTTG AATTTTGTAT CTCGCTACAC 
    TGTTCGATTG AGAATTCTTT TTTTCCGATT GATTCGAATC GGATTTTGTT 
    TTTTTCCTCG ATATAGAATG ACTTCGAATC AACGTATGTT GTTCTACTCC 
    TGCATTGCGA AAGGAACAGT GATTCTCGCA GAATTCGCTT CAAAGGAAGA 
    GCCAGGAATC GAAGATCTAG CTTTGAGATG CATTGAGAAC GTACCTCCAC 
    ATCATTCGAT GATCTCTCAC ACAGTCCATA AGAGAACCTA CGCTTTGATC 
    ATCGATGGAT TGTTTTCGTA TTTCGCGATT TTAGATGAGG TCGTAGCGAA 
    ATCGGAGTCT GTATGGCTAT TCAATCGATT GAAATCAGCT ACAGAGTCTC 
    TAATGGAAGA CGGATCTACT GCGGATTCGT TGGATAATCC GACTCAACAC 
    TGTCTCCAAT CAAAGCTAGA TCCAGTTTTC GCTGAGATTG CTGCTATTGG 
    TGGTAATCAT AATAAGGATT TGGAATTGGA GTTTGGATCA CCGAGGAGTA 
    TAGCGAGGGA GATTAAGAGT AATAATCAGA GTTTGGATTC GTCCAAGGGA 
    CGAAAAGGCG GTGCGTTGAT GCCGCTTTTA GGAAAGCCGT TGAGGGTGTT 
    GAAGAACAAG AAGAGATTGC AGACGGAAGC GAAAAGTGAA GGTCATTGGA 
    ATGAGAAGAA GATGGACCTA GGAGGAGGAG GTAAAGGAGT GAGGAATGGT 
    TTGATTCATG ATCATCATCA TAGACAAAAG GCAAAACAGA TATGGAGGAA 
    ACATGTTTGG ATTGTTTTGA TGTTTGATCT CTGTATCTGC CTTGTTCTCT 
    TTGGAATCTG GCTTTGGATT TGTCAAGGGT TTCAATGCAT CGATGGGTAA 
    TTATCTTCGA TCATCTAAGT TATGTGTGGT TGAATGTTTA AAAAAAATAT 
    CCGAGGTGTT GTTTCCAGGG TTTAAAAAGA AAGCCTGGTT TACACGTTTG 
    TGATGATGTT TTTGTTTGTG TTTTTTTGAA GTTGTTCTTC ATGAGGTAAA 
    AAGAAAAAAA AGTGTTTGTA AAAATCTCTT TTGTAATGAT ATCTCTTCGT 
    TTTCTTTGGA TGTTTTGATT AC

    Gene models with high sequence identity

    1. AT4G27840.1 [+] show detail - SNARE-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G27840.1

    Model type
    Protein coding
    Short Description
    SNARE-like superfamily protein
    Computational Description
    SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52990.1); Has 279 Blast hits to 279 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR