F25904

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25904

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Original: F25904

Determination of introduced cDNA(s)

  • RAFL05-18-P09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-P09 - Resource: pdz87526

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-18-P09 - 5 prime EST
    GAAGAAAAGG CAGAGAAGAG AGAGGCTCTG ATAAAAAAAA AAACAAAAAA 
    AAATGACAAA GGCTTATTCA ACACGTGTCC TCACGTTTCT GATATTGATC
    TCGCTAATGG CGGTGACACT GAACCTTTTT CCCACGGTAG AGGCAAAGAA
    GCGGAGTAGA GATGCTCCTA TAGTGAAAGG TCTCTCATGG AACTTTTACC
    AGAAAGCATG TCCGAAAGTC GAAAACATCA TCAGAAAAGA GCTCAAGAAA
    GTCTTCAAGC GAGATATTGG TTTAGCCGCT GCCATCCTTC GTATACATTT
    CCATGATTGC TTCGTTCAGG GATGTGAAGC ATCAGTGCTG CTAGCTGGAT
    CAGCCAGTGG ACCAGGAGAA CAATCATCAA TCCCAAATCT GACACTACGA
    CAACAAGCCT TTGTCGTCAT TAATAACCTT CGTGCCCTCG TCCAAAAGAA
    GTGCGGTCAA GTCGTCTCTT GCTCAGATAT CCTCGCTCTC GCCGCTCGCG
    ATTCCGTCGT CCTATCAGGA GGGCCAGACT ATGCTGTCCC ACTTGGCCGA
    CGTGACTCTC TAGCGTTCGC GAGCCAGGAA ACGACGTTAA ATAACTTACC
    ACCACCGTTC TTCAACGCGA GTCAGCTCAT CGCCGACTTC GCCAACAGAA
    ACCTCAACAT CACCGACTTA GTAGC

    Gene models with high sequence identity

    1. AT1G71695.1 [+] show detail - Peroxidase superfamily protein
      E-value: 0; Score: 100.00

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-18-P09 - 3 prime EST
    AAGATGAAGC GACGTTCTTA TTTATCAGAT AGTTTTACGC ATTCGACAAC 
    CCAACCACAA GTGCATGAAC TAAATAAAAA CAGAGTTGAC AAAGGAAAGG
    TCGAGATTTA TGGTTATTTA GATCATGGAA ATAGCTTCCT CTATGCCTTC
    TTCCAAAACG GACATGAAAC TTTGGGTGTT TCTGGCTGAA CAATTGGAAC
    GAATCTCTCC TTGTGTTCCA GTTAAGACAC TCATCTGACC CATCTTGATC
    ATCGCCACAG TAAAATAATC AAAAAACAGC TGCTGGTCGA TCGCAAAGCT
    TTCCACAATG CCACGTGTCC TCTTATCCAC GAAGAGATCC TGGTCAGAAG
    TGAATAGCCC TTGTCGGTTC ATGAGATCAA CGTAGTACTT GTTGTCGAAC
    ACGTCAGGAC TCCTTATGTC ATTCACTTGC GTGTTGCTCG AGTTTGCGGT
    GGGACAAGTG CGTTTGAGGC TGTTGGCGAA GAACTGGTTC ATGGTTGGGT
    CTTGGTTCGG GTAGAGTCGG TCTGTGAAAG ACGGACAATG CGCGATTCCG
    ATGGTGTGAC CACCGGAAAG TGCTACTAAG TCGGTGATGT TGAGGTTTCT
    GTTGGCGAAG TCGGCGATGA GCTGACTCGC GTTGAAGAAC GGTGGTGGTA
    AGTTATTTAA CGTCGTTTCC TGGCTCGCGA ACGCTAGAGA GTCACGTCGG
    CC

    Gene models with high sequence identity

    1. AT1G71695.1 [+] show detail - Peroxidase superfamily protein
      E-value: 0; Score: 100.00

    AT1G71695.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18150.1); Has 4523 Blast hits to 4498 proteins in 279 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 207; Plants - 4264; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR