F25920

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25920

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25920

Determination of introduced cDNA(s)

  • RAFL09-37-H18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-37-H18 - Resource: pda06157

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-37-H18 - full reading
    GCAAATGGAA CCACCGCCTT CTTCTCTGTC CTCCACCGCG GTGGCTTCCA 
    CCTCCATCTC CGCCGCCACT GCTCCTGTTC CTCCTCCTCT ACCTCCTCAC
    GTGACTTCTT CTTACCCCGA ATCTCTCGAC TCCTCCCCTC GTTCTCGCAC
    CACCGATGGC TGGGATGACC TTCCTGCTCC TTCTGGCGGC GGCGGTGGCG
    GTGGTGGTAG CGCCGTCTCT TCTAAACTTC GTTTTATGTG TAGCTACGGC
    GGTCATATCC TTCCTCGCCC TCACGATAAG TCTCTCTGCT ACATGGGCGG
    TGACACTCGC ATCGTTGTCG TCGACCGTAA CTCCTCTCTC CCTTCTCTCA
    TCGCTCGTCT CTCCAACACG CTTCTCGACG GTCGTTCCTT CACCCTCAAG
    TACCAGTTAC CTAGCGAAGA CCTTGACTCT CTCATCTCCG TCACTACCGA
    CGAAGATCTC GACAACATGA TCGAAGAGTA TGACCGTACC ATTTCCGCTT
    CCAATTCCAC CAAACCTTCG CGTCTCCGGT TGTTTCTATT CACCTCCAAG
    CCTGAGGCTA CTCAATCTAT GGGTCAGATC CTTGAGAGCT CTGCCAAGAG
    CGACGATTGG TTCCTCAACG CACTCAATAG CGCCGGTCTT CTCAATCGAG
    GATTCTCAGA TTCTGATACT AACGTCAATC GTTTACTTGG TTTGGATGAT
    GCTCTTGCTC TCCGTTCTAA TTCCGGTGAC AACAACAATC GAGATGGTGA
    TGATGGCTCT GTTAAAAGCG CCAAGCAACA GCAACCTCCA CCGCCGCAGC
    AGCAAGAACA ACAGCAAGGA GGCCAAGATG TGAACTGCTT ACCGGATTCT
    CCGATGTTAG ATACATCCTC TTCTTTCGGC TCCACTTCTT CGTCTCCCTC
    GCTCGCCAAT TTGCCTCCGA TCCGTGTCCA TGTAGAGGAA CCAGGCGGAG
    TAAGGACTTT GCCAGATCAG AGAAATCTGG GAATTGAAGA ACAGTTCGCA
    CGATTCAACG TCGGGAACAA GCATCAGCTA CATGACGACG GATTTGCTGC
    GATCTCTTCA CCACCGCCGA TGCCTGTCAC AATCGCCCTT CCTGCTGCGC
    CTGTGACTGC AGCCACCGTC TCTAATGAGT TCCAGGCCAG GGTTTACTCA
    GATGACGAGA GATCCGATCA CGGCGTGCAG GCTGGATACA GGAAGCCTCC
    GACTCCGCGA TCGCAGCCGC AGAATCTACC GCCTCAGCAG GCTCATCAGC
    TGAAATCAAA TAGCGGTGGT GGACACGAGC TGCCATCACC CAATTCCGTT
    TCCAGTGATA GCAGTATGAG CAACCCAATG TTTCACCAAA GACCATCTGT
    CTATCAAGAA CCAATTGCTC AGATACCTTC TGGCTCTACC GTTGTTACTG
    GTATGATCAA TCCCTCAGAT CCAAGCACAC TTTTGTCACA GCATCAGAAT
    CAGGACCCAG CCTATATCCT TCACCCCCAG TTTGAGCAAC AATCTGCACA
    ATCTCAGCCA CAGCAGCAGT TCATACACAC TGCTGCTCCT CCTCAATACA
    TTCATCACCA TCCGTCTAGC GGCCTTCCTG TCCCGACTTA CATCCAGGTT
    TACCCTTCGC AACAGCCTCA ACAGTCCTTC CATCAACACG CAGGTCGACT
    GGATCAGCAG CCTTATCCTG TTTATTATGT CACTGCTCCT GTCCCACCTA
    GGCCCTACAG TATGCCTGTG CCACAATCTC CAAGTGTGAG CGATGCTGCA
    GGGTCTATCC CCTCTAACCA TCCCAACTCT ACCATGATGC CTCCACCTCC
    TAACAACCAC ATGAGAAGTG TTAGCAGTGG CAAACCTGAG ATGGGACAGG
    CTGGGGTTTA CACAACAGCC CCAGGTGTGG GCGGTGCTCA GATGGTTCAC
    CAGATTCCCA CAAACCAGCA GCAATTCATG GGGTATTCGC AGATCCGTCA
    CCCTCCTCAG TCTGGTTCAG CTGGGAATCC AAACTATGGA TATGAATATG
    TCGACAATGC TCATACACAG ATATACTACA CTCAACCTAT GGGACATGCA
    CAGTACCAGA CAATGACTGG GCCTCCACCT GCCATGGTGA TGCCTGATGG
    TTCTGCTGCT GCTAAGCTTC CAGCTGAGAA CATGACTCAA CAGATCCGGA
    GTTCACAGCC ATTGTGACAC ACACAAGGAA CACATGAAGA TGAACCACAA
    AATTTTGGAG GAAGAAAACC CCGGGTTGGT TTTTAAACGT ATAAATATAT
    AACTTTTACT TCTTTTTTCT TCTCTTCTTT TACAAGTTGC TGCATCAAAA
    AAAGAGTCTG GTGTCATGTT AAGTTTGGTA TTATGGGTTG TGTTTAAAAG
    TGTTGTGTGA GTAAATTAAA AAAACAAATA AATAGTGCTT CTTGGTGGGA
    TTTTACATTA TATAGTTGCA ATTGATACAT GTAGTGCTTT ACCAAAAAAA
    AAAAAAAAA

    Gene models with high sequence identity

    1. AT2G01190.1 [+] show detail - Octicosapeptide/Phox/Bem1p family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Octicosapeptide/Phox/Bem1p 2.6e-30
    HMMPfam Octicosapeptide/Phox/Bem1p 1.5e-18

    See the detailed result >

    AT2G01190.1

    Model type
    Protein coding
    Short Description
    Octicosapeptide/Phox/Bem1p family protein
    Computational Description
    Octicosapeptide/Phox/Bem1p family protein; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT3G18230.1); Has 5347 Blast hits to 4615 proteins in 344 species: Archae - 4; Bacteria - 100; Metazoa - 2308; Fungi - 1293; Plants - 931; Viruses - 29; Other Eukaryotes - 682 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR