F25921

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25921

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25921

Determination of introduced cDNA(s)

  • RAFL09-47-C24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-47-C24 - Resource: pda17753

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-47-C24 - full reading 
    GACATAAAGA TTCCTAGTCT TATACTCTGT CTCTCTCTCT CTCTCTCTTT 
    TTCACACTCA CACACAAACT AAACCGGAAT GGCCACCGCC GACGAATTCT 
    CCGACGAAGA TACATCACCG ATTGAAGAAG TCCGTTTAAC GGTAACAAAC 
    ACCGACGATC CAACACTACC GGTTTGGACA TTCAGGATGT GGTTCTTGGG 
    TCTAATCTCA TGTTCTCTCC TCTCTTTCCT TAACCAATTC TTCTCGTACC 
    GAACCGAACC GCTCGTAATC ACTCAAATCA CGGTTCAGGT GGCTACACTA 
    CCTATCGGTC ATTTCTTGGC CAAGGTGCTT CCCAAAACCC GGTTTGGGTT 
    ACCCGGTTGT GGATCGGCCC GGTTCTCGCT GAACCCGGGT CCGTTTAACA 
    TGAAAGAGCA TGTTTTGATA TCGATATTTG CGAATGCGGG TAGTGCTTTC 
    GGATCCGGGT CGGCTTATGC GGTTGGTATC ATCACAATTA TTAAAGCTTT 
    TTATGGCCGG AGTATCTCTT TTATTGCCGG CTGGCTCCTC ATCATCACTA 
    CACAGGTATT GGGATATGGC TGGGCCGGTT TACTGAGGAA ATATGTGGTC 
    GAACCGGCTC ATATGTGGTG GCCTAGCACT CTGGTTCAAG TGTCACTGTT 
    TAGGGCATTG CATGAGAAGG ACGACCAAAG GATGACGAGA GCAAAATTCT 
    TTGTGATAGC ATTAGTCTGT AGTTTTGGAT GGTACATAGT CCCTGGCTAT 
    CTCTTCACAA CACTCACAAG CATCTCATGG GTTTGTTGGG CATTTCCAAG 
    ATCAGTCACT GCTCAACAGA TTGGTTCTGG AATGAGAGGT CTTGGTCTTG 
    GAGCCTTTAC ACTAGACTGG ACCGCGGTTG CCTCTTTCTT GTTTAGTCCA 
    CTTATCAGCC CCTTCTTCGC CATCGCTAAT GTTTTCATCG GTTATGTTCT 
    TTTGATCTAC TTCGTCTTGC CTTTAGCCTA TTGGGGATTT GATTCTTATA 
    ACGCTACGAG GTTTCCTATA TTTTCGTCGC ATCTTTTCAC ATCGGTTGGT 
    AATACATATG ATATTCCTGC GATCGTGAAT GATAACTTTG AGCTCGATTT 
    AGCTAAGTAT GAGCAACAAG GAAGGATTAA CTTGAGCATG TTCTTTGCTC 
    TTACCTATGG GCTTGGTTTC GCCACCATTG CTTCTACGCT CACTCATGTA 
    GCTCTCTTCT ATGGCAAGGA AATTTCTGAG AGGTTTCGAG TTTCATACAA 
    AGGCAAGGAA GATATACACA CTAGGTTAAT GAAGAGATAT AAAGACATAC 
    CTTCATGGTG GTTTTACTCA ATGTTGGCTG CGACACTACT TATCTCTCTT 
    GCATTATGTG TTTTCTTGAA CGATGAGGTT CAAATGCCTT GGTGGGGACT 
    TGTGTTCGCA AGCGCGATGG CTTTCGTCTT CACACTCCCG ATAAGCATCA 
    TAACCGCAAC AACTAACCAA ACACCGGGAT TGAATATAAT AACAGAGTAC 
    GCAATGGGAC TCATTTACCC GGGACGACCT ATCGCAAACG TATGCTTCAA 
    AGTCTATGGA TACATGAGTA TGGCACAAGC AGTCTCTTTC TTAAATGACT 
    TCAAACTTGG TCATTACATG AAGATCCCAC CTAGATCCAT GTTCTTGGTT 
    CAATTCATCG GTACAATTCT TGCCGGAACA ATCAACATAA CGGTCGCATG 
    GTGGCAGTTA AACTCTATCA AAAACATATG TCAAGAGGAA CTTCTACCTC 
    CCAACAGTCC ATGGACATGT CCGGGTGACC GTGTTTTCTT CGATGCATCG 
    GTCATTTGGG GATTGGTCGG ACCAAAACGG ATTTTTGGTT CTCAGGGAAA 
    CTATGCGGCC ATGAACTGGT TTTTCCTCGG AGGTGCATTA GGACCAGTCA 
    TAGTGTGGTC ATTGCACAAA GCGTTCCCAA AACGTTCTTG GATTCCACTT 
    GTAAATCTCC CTGTTCTTCT AGGAGCAACC GCAATGATGC CACCTGCGAC 
    CGCGGTGAAC TACAACTCGT GGATATTGGT GGGGACGATA TTCAACTTGT 
    TTGTGTTCCG GTACAGGAAA AGTTGGTGGC AGAGGTATAA CTACGTTCTC 
    TCAGCCGCTA TGGATGCCGG TGTAGCTTTC ATGGCGGTTT TGTTGTACTT 
    CTCGGTGGGG ATGGAGGAAA AGAGTTTGGA CTGGTGGGGA ACAAGAGGTG 
    AACATTGTGA TCTAGCTAAA TGTCCAACCG CTAGAGGAGT AATTGTTGAT 
    GGTTGTCCGG TTAAATAATC TTAAAGGATC CATTGGTGTG TTTCGAAAAA 
    AAAAA

    Gene models with high sequence identity

    1. AT5G64410.1 [+] show detail - oligopeptide transporter 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Tetrapeptide transporter, OPT1/isp4 7.3e-174
    HMMTigr Oligopeptide transporter OPT superfamily 3.7e-188
    HMMPanther ISP4 LIKE PROTEIN 1.2e-158
    HMMPfam Oligopeptide transporter OPT superfamily 3.1e-180

    See the detailed result >

    AT5G64410.1

    Model type
    Protein coding
    Short Description
    oligopeptide transporter 4
    Curator Summary
    oligopeptide transporter
    Computational Description
    oligopeptide transporter 4 (OPT4); CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 2 (TAIR:AT1G09930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR