F25923

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25923

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25923

Determination of introduced cDNA(s)

  • RAFL09-88-M11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-88-M11 - Resource: pda17891

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-88-M11 - full reading
    CCCGAGATAG ATAGAGAGAG AGATAAGGGA GGGTGAAAAA ATAAGCACAC 
    ACCATTATCC ATCTGTTTTT TTTTTTCATC TCTCTCTCTC TCTTTTCTTC
    TTCGATTCGT GTTTTCTCCA TTTCATTCTC TGTTACGCTT CAATCGAACT
    CGGAAGTCAT GGCTATGGCC ACAAGGGTGT TGGCTCAATC GACTCCACCG
    TCTTTAGCTT GTTACCAGAG GAATGTTCCT TCACGTGGAT CTGGAAGATC
    GAGAAGATCG GTGAAAATGA TGTGTAGTCA GTTACAAGTG TCTGGTTTAA
    GAATGCAAGG GTTTATGGGA TTACGTGGTA ACAATGCTTT AGACACTCTT
    GGAAAAAGTC GTCAAGATTT TCATTCGAAG GTGCGACAGG CAATGAATGT
    GCCCAAGGGG AAAGCTAGCC GGTTTACGGT GAAAGCAATG TTTGAAAGAT
    TTACGGAGAA AGCTATCAAA GTTATTATGC TTGCTCAGGA GGAAGCTAGA
    AGACTAGGCC ACAATTTTGT GGGAACCGAA CAAATTCTTC TTGGTCTTAT
    TGGTGAGGGT ACTGGAATCG CTGCTAAAGT TTTGAAATCC ATGGGGATTA
    ACTTAAAAGA TGCACGTGTG GAGGTTGAGA AGATTATTGG AAGGGGAAGT
    GGCTTTGTTG CTGTTGAGAT CCCATTCACT CCTCGTGCCA AGCGTGTTCT
    TGAACTCTCT CTTGAGGAAG CTCGCCAACT TGGTCACAAT TACATTGGAT
    CCGAGCACCT TTTGCTTGGG TTGCTACGTG AAGGTGAAGG AGTTGCAGCT
    CGAGTCCTTG AGAATTTAGG TGCAGATCCT AGTAATATTC GCACTCAGGT
    GATACGCATG GTGGGTGAGA ACAATGAAGT AACTGCTAAT GTTGGGGGAG
    GAAGCAGCAG CAATAAGATG CCAACTCTTG AAGAGTACGG AACAAACTTG
    ACGAAACTGG CTGAGGAGGG TAAATTGGAC CCAGTTGTTG GAAGGCAGCC
    GCAGATAGAA CGTGTGGTGC AAATTCTTGG CAGGAGAACC AAGAACAACC
    CTTGTCTTAT TGGAGAACCT GGTGTTGGTA AGACAGCTAT TGCTGAAGGA
    CTTGCACAGC GTATTGCCAG TGGCGATGTC CCTGAAACTA TTGAAGGGAA
    GAAGGTTATA ACACTCGACA TGGGTCTTCT AGTTGCTGGA ACAAAATATC
    GTGGAGAGTT TGAAGAGAGA TTGAAAAAGC TTATGGAGGA AATTAGACAG
    AGCGATGAGA TAATCTTATT TATCGACGAA GTGCATACTT TGATTGGGGC
    TGGAGCAGCA GAAGGTGCAA TTGACGCAGC TAACATTTTA AAACCAGCTC
    TCGCTAGAGG TGAATTGCAG TGCATTGGAG CGACAACATT AGATGAATAC
    CGAAAGCACA TTGAGAAAGA CCCTGCCTTG GAAAGAAGAT TCCAGCCAGT
    GAAAGTACCT GAACCTACCG TGGATGAAAC TATTCAGATC CTTAAGGGTC
    TGCGAGAGCG ATATGAAATT CACCACAAGC TTCGTTACAC AGACGAATCT
    TTAGTAGCAG CTGCACAGTT GTCATACCAG TATATAAGTG ATCGTTTCCT
    TCCTGACAAG GCAATTGACT TGATTGATGA AGCTGGTTCT CGGGTTCGAC
    TTCGTCATGC ACAGGTCCCT GAGGAAGCTA GGGAGCTTGA GAAGGAGCTT
    AGGCAGATAA CAAAGGAGAA GAATGAAGCT GTCCGTGGCC AGGACTTTGA
    GAAGGCTGGG ACACTTCGGG ATAGAGAAAT TGAACTCAGA GCTGAGGTAT
    CTGCAATCCA AGCGAAAGGC AAGGAGATGA GCAAAGCAGA GAGTGAGACC
    GGTGAGGAAG GCCCTATGGT CACGGAGTCA GACATCCAAC ACATTGTGTC
    TTCATGGACT GGTATTCCTG TTGAGAAAGT ATCAACCGAT GAGTCTGACC
    GTCTCCTCAA GATGGAAGAA ACCCTCCACA AACGTATCAT AGGCCAAGAC
    GAAGCTGTGA AAGCCATAAG CCGAGCCATT CGCCGTGCAC GTGTTGGACT
    CAAGAATCCT AACCGTCCAA TCGCTAGTTT CATATTCTCG GGTCCAACCG
    GTGTTGGGAA ATCTGAGCTT GCCAAAGCTT TAGCAGCTTA CTACTTCGGT
    TCCGAAGAAG CCATGATTCG TCTAGATATG AGTGAGTTCA TGGAGAGGCA
    CACTGTCTCC AAACTCATCG GTTCACCTCC TGGATATGTC GGATACACCG
    AAGGAGGTCA GTTAACAGAA GCGGTTAGAC GTCGCCCTTA CACCGTCGTT
    CTATTCGATG AGATTGAAAA AGCCCATCCA GATGTTTTCA ACATGATGCT
    TCAAATCCTT GAAGATGGTA GATTAACAGA CAGCAAAGGA AGAACAGTTG
    ACTTCAAAAA CACACTTCTC ATCATGACAT CAAACGTCGG AAGCAGCGTG
    ATTGAGAAAG GAGGAAGACG TATCGGATTC GACTTAGACT ACGACGAGAA
    AGACAGCAGT TACAACAGAA TCAAGAGCCT TGTAACAGAG GAGCTGAAAC
    AATACTTCAG ACCCGAGTTC CTAAACAGGC TAGACGAGAT GATTGTGTTC
    AGACAGCTAA CAAAGCTGGA AGTGAAAGAA ATTGCTGACA TACTGTTGAA
    GGAAGTGTTC GAGAGGTTGA AGAAGAAAGA GATTGAGCTT CAGGTGACCG
    AAAGATTCAA AGAGAGAGTA GTAGACGAAG GTTATAACCC GAGCTATGGA
    GCAAGACCGT TGAGAAGAGC CATCATGAGG CTTTTAGAGG ATAGTATGGC
    AGAGAAGATG CTTGCGAGAG AGATCAAAGA AGGAGACTCG GTGATTGTGG
    ACGTTGACGC TGAAGGTAAC GTCACGGTGC TAAATGGTGG AAGTGGCACT
    CCAACTACTT CCTTGGAGGA GCAGGAAGAT TCTCTCCCTG TTGCTTAAAT
    AAAAAAAGCA AAGTGCGTGC GTTTCTCTCT TCTTTTGCTT TGGCCCTTAA
    ATGAATTATG GCAAGAGAAG GTTATGAATT GAGATACATG GGGGCTTTCT
    TAATATACAT TTTCTAAATA TATGAAAAAT GTAATGTATA GATGACATTG
    TGTAGCTTCT TTTTCTTCCA TGCTTTTTAA GGACTTGTCT TTGGTGCCCA
    AAAAAAAAA

    Gene models with high sequence identity

    1. AT5G50920.1 [+] show detail - CLPC homologue 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart ATPase, AAA+ type, core 1.2e-13
    HMMSmart ATPase, AAA+ type, core 3.3e-10
    HMMPanther ATP-DEPENDENT CLP PROTEASE 0
    HMMPanther ATP-DEPENDENT CLP PROTEASE 0
    Gene3D no description 2.3e-83
    Gene3D no description 2.8e-88
    Gene3D no description 6.5e-25
    PatternScan Chaperonin ClpA/B, conserved site 0
    PatternScan Chaperonin clpA/B 0
    FPrintScan Chaperonin clpA/B 2.9e-41
    FPrintScan Chaperonin clpA/B 2.9e-41
    FPrintScan Chaperonin clpA/B 2.9e-41
    FPrintScan Chaperonin clpA/B 2.9e-41
    Coil coiled-coil 0
    Coil coiled-coil 0
    ProfileScan UvrB/UvrC protein 11.45
    superfamily P-loop containing nucleoside triphosphate hyd 2.2e-108
    superfamily P-loop containing nucleoside triphosphate hyd 2.2e-85
    superfamily Double Clp-N motif 1.4e-36
    HMMPfam ATPase, AAA-2 7.6e-56
    HMMPfam Clp, N-terminal 9.5e-18
    HMMPfam Clp, N-terminal 2.3e-19
    HMMPfam ATPase, AAA-type, core 4.6e-15
    HMMPfam Clp ATPase, C-terminal 2e-24
    HMMPfam UvrB/UvrC protein 1.5e-07

    See the detailed result >

    AT5G50920.1

    Model type
    Protein coding
    Short Description
    CLPC homologue 1
    Curator Summary
    Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.
    Computational Description
    CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR