F25923

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25923

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25923

Determination of introduced cDNA(s)

  • RAFL09-88-M11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-88-M11 - Resource: pda17891

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-88-M11 - full reading 
    CCCGAGATAG ATAGAGAGAG AGATAAGGGA GGGTGAAAAA ATAAGCACAC 
    ACCATTATCC ATCTGTTTTT TTTTTTCATC TCTCTCTCTC TCTTTTCTTC 
    TTCGATTCGT GTTTTCTCCA TTTCATTCTC TGTTACGCTT CAATCGAACT 
    CGGAAGTCAT GGCTATGGCC ACAAGGGTGT TGGCTCAATC GACTCCACCG 
    TCTTTAGCTT GTTACCAGAG GAATGTTCCT TCACGTGGAT CTGGAAGATC 
    GAGAAGATCG GTGAAAATGA TGTGTAGTCA GTTACAAGTG TCTGGTTTAA 
    GAATGCAAGG GTTTATGGGA TTACGTGGTA ACAATGCTTT AGACACTCTT 
    GGAAAAAGTC GTCAAGATTT TCATTCGAAG GTGCGACAGG CAATGAATGT 
    GCCCAAGGGG AAAGCTAGCC GGTTTACGGT GAAAGCAATG TTTGAAAGAT 
    TTACGGAGAA AGCTATCAAA GTTATTATGC TTGCTCAGGA GGAAGCTAGA 
    AGACTAGGCC ACAATTTTGT GGGAACCGAA CAAATTCTTC TTGGTCTTAT 
    TGGTGAGGGT ACTGGAATCG CTGCTAAAGT TTTGAAATCC ATGGGGATTA 
    ACTTAAAAGA TGCACGTGTG GAGGTTGAGA AGATTATTGG AAGGGGAAGT 
    GGCTTTGTTG CTGTTGAGAT CCCATTCACT CCTCGTGCCA AGCGTGTTCT 
    TGAACTCTCT CTTGAGGAAG CTCGCCAACT TGGTCACAAT TACATTGGAT 
    CCGAGCACCT TTTGCTTGGG TTGCTACGTG AAGGTGAAGG AGTTGCAGCT 
    CGAGTCCTTG AGAATTTAGG TGCAGATCCT AGTAATATTC GCACTCAGGT 
    GATACGCATG GTGGGTGAGA ACAATGAAGT AACTGCTAAT GTTGGGGGAG 
    GAAGCAGCAG CAATAAGATG CCAACTCTTG AAGAGTACGG AACAAACTTG 
    ACGAAACTGG CTGAGGAGGG TAAATTGGAC CCAGTTGTTG GAAGGCAGCC 
    GCAGATAGAA CGTGTGGTGC AAATTCTTGG CAGGAGAACC AAGAACAACC 
    CTTGTCTTAT TGGAGAACCT GGTGTTGGTA AGACAGCTAT TGCTGAAGGA 
    CTTGCACAGC GTATTGCCAG TGGCGATGTC CCTGAAACTA TTGAAGGGAA 
    GAAGGTTATA ACACTCGACA TGGGTCTTCT AGTTGCTGGA ACAAAATATC 
    GTGGAGAGTT TGAAGAGAGA TTGAAAAAGC TTATGGAGGA AATTAGACAG 
    AGCGATGAGA TAATCTTATT TATCGACGAA GTGCATACTT TGATTGGGGC 
    TGGAGCAGCA GAAGGTGCAA TTGACGCAGC TAACATTTTA AAACCAGCTC 
    TCGCTAGAGG TGAATTGCAG TGCATTGGAG CGACAACATT AGATGAATAC 
    CGAAAGCACA TTGAGAAAGA CCCTGCCTTG GAAAGAAGAT TCCAGCCAGT 
    GAAAGTACCT GAACCTACCG TGGATGAAAC TATTCAGATC CTTAAGGGTC 
    TGCGAGAGCG ATATGAAATT CACCACAAGC TTCGTTACAC AGACGAATCT 
    TTAGTAGCAG CTGCACAGTT GTCATACCAG TATATAAGTG ATCGTTTCCT 
    TCCTGACAAG GCAATTGACT TGATTGATGA AGCTGGTTCT CGGGTTCGAC 
    TTCGTCATGC ACAGGTCCCT GAGGAAGCTA GGGAGCTTGA GAAGGAGCTT 
    AGGCAGATAA CAAAGGAGAA GAATGAAGCT GTCCGTGGCC AGGACTTTGA 
    GAAGGCTGGG ACACTTCGGG ATAGAGAAAT TGAACTCAGA GCTGAGGTAT 
    CTGCAATCCA AGCGAAAGGC AAGGAGATGA GCAAAGCAGA GAGTGAGACC 
    GGTGAGGAAG GCCCTATGGT CACGGAGTCA GACATCCAAC ACATTGTGTC 
    TTCATGGACT GGTATTCCTG TTGAGAAAGT ATCAACCGAT GAGTCTGACC 
    GTCTCCTCAA GATGGAAGAA ACCCTCCACA AACGTATCAT AGGCCAAGAC 
    GAAGCTGTGA AAGCCATAAG CCGAGCCATT CGCCGTGCAC GTGTTGGACT 
    CAAGAATCCT AACCGTCCAA TCGCTAGTTT CATATTCTCG GGTCCAACCG 
    GTGTTGGGAA ATCTGAGCTT GCCAAAGCTT TAGCAGCTTA CTACTTCGGT 
    TCCGAAGAAG CCATGATTCG TCTAGATATG AGTGAGTTCA TGGAGAGGCA 
    CACTGTCTCC AAACTCATCG GTTCACCTCC TGGATATGTC GGATACACCG 
    AAGGAGGTCA GTTAACAGAA GCGGTTAGAC GTCGCCCTTA CACCGTCGTT 
    CTATTCGATG AGATTGAAAA AGCCCATCCA GATGTTTTCA ACATGATGCT 
    TCAAATCCTT GAAGATGGTA GATTAACAGA CAGCAAAGGA AGAACAGTTG 
    ACTTCAAAAA CACACTTCTC ATCATGACAT CAAACGTCGG AAGCAGCGTG 
    ATTGAGAAAG GAGGAAGACG TATCGGATTC GACTTAGACT ACGACGAGAA 
    AGACAGCAGT TACAACAGAA TCAAGAGCCT TGTAACAGAG GAGCTGAAAC 
    AATACTTCAG ACCCGAGTTC CTAAACAGGC TAGACGAGAT GATTGTGTTC 
    AGACAGCTAA CAAAGCTGGA AGTGAAAGAA ATTGCTGACA TACTGTTGAA 
    GGAAGTGTTC GAGAGGTTGA AGAAGAAAGA GATTGAGCTT CAGGTGACCG 
    AAAGATTCAA AGAGAGAGTA GTAGACGAAG GTTATAACCC GAGCTATGGA 
    GCAAGACCGT TGAGAAGAGC CATCATGAGG CTTTTAGAGG ATAGTATGGC 
    AGAGAAGATG CTTGCGAGAG AGATCAAAGA AGGAGACTCG GTGATTGTGG 
    ACGTTGACGC TGAAGGTAAC GTCACGGTGC TAAATGGTGG AAGTGGCACT 
    CCAACTACTT CCTTGGAGGA GCAGGAAGAT TCTCTCCCTG TTGCTTAAAT 
    AAAAAAAGCA AAGTGCGTGC GTTTCTCTCT TCTTTTGCTT TGGCCCTTAA 
    ATGAATTATG GCAAGAGAAG GTTATGAATT GAGATACATG GGGGCTTTCT 
    TAATATACAT TTTCTAAATA TATGAAAAAT GTAATGTATA GATGACATTG 
    TGTAGCTTCT TTTTCTTCCA TGCTTTTTAA GGACTTGTCT TTGGTGCCCA 
    AAAAAAAAA

    Gene models with high sequence identity

    1. AT5G50920.1 [+] show detail - CLPC homologue 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart ATPase, AAA+ type, core 1.2e-13
    HMMSmart ATPase, AAA+ type, core 3.3e-10
    HMMPanther ATP-DEPENDENT CLP PROTEASE 0
    HMMPanther ATP-DEPENDENT CLP PROTEASE 0
    Gene3D no description 2.3e-83
    Gene3D no description 2.8e-88
    Gene3D no description 6.5e-25
    PatternScan Chaperonin ClpA/B, conserved site 0
    PatternScan Chaperonin clpA/B 0
    FPrintScan Chaperonin clpA/B 2.9e-41
    FPrintScan Chaperonin clpA/B 2.9e-41
    FPrintScan Chaperonin clpA/B 2.9e-41
    FPrintScan Chaperonin clpA/B 2.9e-41
    Coil coiled-coil 0
    Coil coiled-coil 0
    ProfileScan UvrB/UvrC protein 11.45
    superfamily P-loop containing nucleoside triphosphate hyd 2.2e-108
    superfamily P-loop containing nucleoside triphosphate hyd 2.2e-85
    superfamily Double Clp-N motif 1.4e-36
    HMMPfam ATPase, AAA-2 7.6e-56
    HMMPfam Clp, N-terminal 9.5e-18
    HMMPfam Clp, N-terminal 2.3e-19
    HMMPfam ATPase, AAA-type, core 4.6e-15
    HMMPfam Clp ATPase, C-terminal 2e-24
    HMMPfam UvrB/UvrC protein 1.5e-07

    See the detailed result >

    AT5G50920.1

    Model type
    Protein coding
    Short Description
    CLPC homologue 1
    Curator Summary
    Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.
    Computational Description
    CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR