F25942

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25942

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25942

Determination of introduced cDNA(s)

  • RAFL06-86-K13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-86-K13 - Resource: pda03896

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-86-K13 - full reading
    GAATCTCTCC CTCTTTCTTC CATTTCCCAG AACTCTCAGA GTTTCGCCAC 
    TTCTTCTGAA GAATCTGAAA GATCACAAAG TCCAAAGAAA AAAAATGAGC
    GTGATCACAA CTCCAATAGA GACCCTGCAC CTAAAGTCAA CACTTCGTCT
    TCTACCACGA GCTGTTTATC GCAGTCAACG GATTCAAGTT TTCCCGCCCA
    ACATCTTCTC GAACACTTCT CTGAGTTCTC CACTTCGCAT CGACCCAATC
    TCTCAAGTTG GCGGATCGAG GAATTTGTGG CGTAGATATG CATCTGATAA
    TTTCTCGGAG ATGGGTTTGG ATCCTGGAGC TGATCCATTC AAGGTTATTG
    AGAAGCCTTC TATAGTGGAT AGAATGAAGA AAGCAAACTC AATTCTTCCT
    CATGTAGTGT TGGCGAGTAC AATATTAGCT CTTATCTATC CTCCTTCTTT
    CACTTGGTTT ACGTCGAGGT ACTTTGTGCC CGCTTTAGGT TTTTTGATGT
    TTGCGGTTGG TATCAATTCA AACGAGAAAG ACTTTCTTGA AGCTTTCAAA
    AGACCAAAAG CTATCCTCCT CGGTTATGTT GGACAATATC TCGTAAAGCC
    TGTCCTAGGT TTCATCTTTG GCCTAGCTGC TGTTTCTCTT TTCCAACTCC
    CAACTCCAAT TGGTGCTGGA ATCATGTTGG TATCATGTGT TAGTGGAGCT
    CAGTTGTCAA ACTATGCGAC ATTCCTAACT GATCCAGCAT TGGCACCTCT
    TAGCATCGTC ATGACATCTC TATCAACCGC TACTGCGGTT CTTGTCACAC
    CGATGCTATC ACTCCTGCTC ATTGGGAAGA AACTACCCGT TGATGTAAAA
    GGAATGATAT CCAGCATTCT TCAGGTTGTA ATCGCACCAA TCGCTGCAGG
    ATTGCTACTA AACAAGTTGT TCCCAAAAGT ATCAAATGCA ATCCGACCAT
    TTCTCCCGAT TCTATCGGTT CTCGACACAG CTTGCTGCGT TGGAGCACCA
    CTCGCATTGA ACATAAACTC GGTCATGTCT CCATTTGGAG CCACCATATT
    GTTACTAGTA ACAATGTTTC ATCTCTCAGC TTTCCTCGCT GGATACTTCC
    TTACCGGTTC TGTCTTTAGA AACGCTCCAG ACGCTAAAGC CATGCAAAGA
    ACATTGTCCT ATGAAACTGG AATGCAGAGT AGCCTTTTGG CTCTAGCGCT
    TGCTACTAAG TTCTTTCAAG ATCCTCTTGT GGGGATTCCT CCTGCTATAT
    CTACGGTGGT AATGTCATTG ATGGGGTTCA CTCTCGTTTT GATCTGGTCT
    AAGGAAAAGA GTAACACATT TTAACATTTT GATTTTGTTT CACTCCACAT
    TTTGATTATA CATATATATA TGTACTACAA ATAATTGGAA AATTCTTCTT
    GTAATATAAA TAATTCAATA CAGAATTTGA GATTTTTAAT GTACTAATCT
    CCATTTTGTC TTTAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT4G22840.1 [+] show detail - Sodium Bile acid symporter family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Bile acid:sodium symporter 2.5e-76
    HMMPfam Bile acid:sodium symporter 2.3e-47

    See the detailed result >

    AT4G22840.1

    Model type
    Protein coding
    Short Description
    Sodium Bile acid symporter family
    Computational Description
    Sodium Bile acid symporter family; FUNCTIONS IN: transporter activity, bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); BEST Arabidopsis thaliana protein match is: bile acid transporter 5 (TAIR:AT4G12030.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR