F25945

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25945

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25945

Determination of introduced cDNA(s)

  • RAFL09-15-G15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-15-G15 - Resource: pda02039

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-15-G15 - full reading 
    ATCTCTTATC CGAATCCTCC CAATTTGTCT GTCTCTCTTT TGTTTTCTCT 
    GCTAACAGAT CTCTCTAAAT ATCTGTTACT TTTGTTCATA TCTTTTTACT 
    TTTCAAACTA CTAATTTTCC TTTCGCTTCT TCTATTAATA ACAACACTCT 
    CTCTCTCAGA CTTCTTTTCT TTTTTTTCTA CGGCGTTGAT TCATTCGCAA 
    TGACCTCAGT TTCTGTGTAC CATAATTGAC CTAGCAGATT CTGTTTTTAA 
    TGGTAGATTC TGACCCGGTG GAATTTCCGC CGGAGAACCG CCGTGGACAG 
    CTCTTCGGCA AATACGAGGT CGGAAAATTG GTGGGATGCG GCGCCTTCGC 
    GAAAGTGTAC CACGGGAGGA GCACAGCGAC GGGTCAGAGC GTTGCGATCA 
    AAGTGGTGAG CAAGCAACGG CTGCAGAAAG GAGGACTCAA TGGCAACATT 
    CAGAGAGAGA TCGCTATCAT GCACCGTCTG CGCCACCCTT CTATCGTGCG 
    CCTGTTCGAG GTCCTCGCCA CCAAATCCAA GATCTTCTTC GTCATGGAAT 
    TCGCCAAGGG CGGTGAGCTA TTCGCCAAAG TCTCCAAGGG CAGGTTCTGC 
    GAGGATCTTA GCCGTCGTTA TTTCCAGCAG CTCATCTCCG CCGTCGGATA 
    TTGCCACTCC CGCGGCATCT TTCACCGTGA TCTCAAACCG GAGAATCTCC 
    TCCTCGACGA GAAGCTCGAT TTGAAGATCT CTGATTTCGG ACTCAGCGCT 
    CTTACCGATC AGATCCGACC CGACGGCCTC CTCCACACAC TCTGTGGTAC 
    GCCGGCGTAC GTGGCGCCTG AGGTTTTGGC GAAGAAAGGG TACGACGGTG 
    CTAAAATCGA CATATGGTCA TGTGGAATCA TACTGTTCGT CCTCAACGCC 
    GGTTATCTCC CTTTCAACGA CCATAATCTC ATGGTTATGT ACCGGAAAAT 
    CTACAAGGGA GAATTTCGCA TTCCCAAGTG GACCTCACCG GATCTCCGGC 
    GACTGCTGAC TCGGCTTTTA GACACGAATC CGCAGACGAG GATCACTATC 
    GAAGAGATCA TCCACGATCC ATGGTTCAAA CAGGGCTACG ACGATCGGAT 
    GTCTAAATTC CATCTAGAGG ACTCCGATAT GAAACTCCCG GCGGACGAGA 
    CCGACAGCGA GATGGGAGCA AGGAGGATGA ACGCATTCGA CATCATCTCA 
    GGATCTCCAG GGTTCAATCT CTCCGGTCTT TTCGGAGACG CCAGAAAGTA 
    CGACCGAGTG GAACGGTTCG TGTCGGCGTG GACGGCGGAG AGGGTGGTGG 
    AGAGGCTGGA GGAGATCGTG TCGGCGGAGA ATCTGACGGT GGCGAAGAAG 
    GAAACATGGG GGATGAAGAT CGAGGGGCAA AAAGGTAACT TCGCAATGGT 
    GGTTGAGATA AACCAGCTAA CGGACGAGCT GGTTATGATA GAGGTGAGGA 
    AGAGACAAAG AGCCGCTGCA TCTGGACGAG ATTTATGGAC AGATACACTC 
    AGGCCTTTCT TCGTCGAGCT TGTGCACGAA TCAGACCAAA CGGACCCAGA 
    ACCAACTCAA GTACATACGA CGTCGTAGTT TAGGTATCTG TCAAATAAAT 
    TATCCAAATA ATAATTAAAA AAAAATATCC CGGGTTATAT GTAATTGCTT 
    TTTTTTTTAC CCGGAGAATA TCTCTGACAT AATTATTCAG GAAATTTCTC 
    GACAAATCTT AATTTTTAGT TGGCAAGTAT GTATCTTCTT GTTATGTAAT 
    CATAATTATA TTTTATATAA ATGAAAAATA AAATACAAAA AAAAAAAAAA 
    AA

    Gene models with high sequence identity

    1. AT5G01820.1 [+] show detail - serine/threonine protein kinase 1
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 3.3e-89
    ProfileScan Protein kinase, catalytic domain 50.28
    ProfileScan NAF/FISL domain 11.688
    HMMPfam Serine/threonine-protein kinase-like domain 8.9e-73
    HMMPfam NAF domain 1.3e-20
    Gene3D no description 2.9e-64
    HMMSmart Serine/threonine-protein kinase domain 2e-102
    HMMSmart Tyrosine-protein kinase, catalytic domain 3.6e-12
    HMMPanther CBL-interacting protein kinase 5.9e-194
    HMMPanther Calcium/calmodulin-dependent protein kinase-like 5.9e-194

    See the detailed result >

    AT5G01820.1

    Model type
    Protein coding
    Short Description
    serine/threonine protein kinase 1
    Curator Summary
    Encodes a CBL-interacting serine/threonine protein kinase.
    Computational Description
    serine/threonine protein kinase 1 (SR1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: SOS3-interacting protein 4 (TAIR:AT2G30360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR