F25947

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25947

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25947

Determination of introduced cDNA(s)

  • RAFL07-08-B16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-08-B16 - Resource: pda09480

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-08-B16 - full reading
    CACTTTGAAC CATTGGTTGG TTTTGATCAA AACCAAAGGA TGTGTGTATG 
    TATGTATATA TTCTAACGCT CAAAACTGAT CACTAGCATT CCTAGATTTT
    TCCTTCTTGT GATCACTTGC AGCTATGGCC ACACATGCAG CTCTCGCCGT
    CTCAAGAATC CCGGTCACAC AGCGACTGCA GTCTAAGAGT GCCATTCACT
    CTTTCCCTGC TCAATGCTCC TCCAAGAGGC TAGAAGTCGC TGAATTCTCC
    GGTCTGCGTA TGAGTAGTAT CGGTGGGGAA GCATCTTTCT TCGATGCTGT
    AGCTGCACAA ATCATCCCTA AGGCTGTGAC AACATCAACT CCTGTTAGAG
    GAGAGACAGT GGCGAAACTG AAAGTTGCGA TTAACGGTTT TGGAAGGATT
    GGTAGGAACT TTCTTAGGTG TTGGCATGGT CGTAAAGACT CTCCTCTCGA
    AGTTGTTGTA CTTAACGACA GTGGTGGTGT CAAGAATGCA TCCCACTTGC
    TTAAGTATGA CTCCATGCTT GGAACCTTCA AGGCTGAAGT GAAAATTGTG
    GACAATGAAA CTATTAGTGT TGATGGTAAG CTCATCAAAG TTGTCTCCAA
    CAGAGACCCT CTTAAGCTTC CATGGGCTGA GCTCGGCATT GACATTGTTA
    TCGAGGGAAC AGGAGTGTTT GTTGATGGGC CAGGAGCAGG GAAGCATATC
    CAAGCCGGAG CCTCGAAAGT TATCATCACT GCACCAGCCA AAGGTGCTGA
    TATCCCTACC TATGTTATGG GAGTCAATGA GCAAGACTAT GGTCACGATG
    TCGCTAACAT TATTAGCAAT GCATCTTGCA CCACCAACTG TTTGGCACCT
    TTTGCTAAAG TCTTGGATGA AGAATTTGGA ATTGTCAAGG GGACAATGAC
    AACCACACAC TCCTACACCG GAGACCAAAG GCTTCTAGAT GCATCACACA
    GGGACCTAAG GCGTGCAAGA GCCGCAGCAC TGAACATAGT GCCTACCAGC
    ACAGGAGCAG CCAAGGCGGT GTCATTAGTG TTGCCGCAGC TGAAGGGTAA
    ACTTAACGGC ATTGCACTCC GTGTGCCAAC ACCAAACGTC TCAGTGGTTG
    ACCTTGTTAT AAACGTTGAG AAGAAAGGTT TGACAGCAGA GGATGTGAAC
    GAGGCCTTTA GAAAAGCCGC TAATGGACCG ATGAAAGGCA TTTTAGACGT
    TTGCGATGCG CCTCTTGTCT CTGTTGACTT CAGGTGCTCT GATGTCTCTA
    CCACCATTGA CTCGTCCCTC ACTATGGTTA TGGGTGATGA TATGGTCAAG
    GTGGTTGCTT GGTATGATAA CGAGTGGGGT TACAGCCAAA GAGTGGTGGA
    TTTGGCTCAC CTAGTGGCTA GCAAGTGGCC GGGAGCGGAA GCTGTTGGAA
    GTGGAGATCC TTTGGAGGAT TTCTGCAAGA CAAACCCGGC TGATGAGGAA
    TGCAAAGTCT ATGACTGAAC AACTTTGATC ATTTCTTTCT TTATTTTTCA
    CCAAAACAAT ACTTTGTATC ATGAGTTACT TATTCGAAAT CGTACTATGA
    AAAAAAAAAA AAAAAGAGCT CTTGGATCCA AGCTTTAGCT GAAGGTAGAC
    CATGGAATGA TCCGCCAGTT GTTAAGGAAG CGAATAAGAA GCCTCCGTTG
    GCTCAGGGCG GTTACGGAAA CAACAATAAC AATAACAATG GAGGATGGGA
    TAGTTGGGAT AACGATGATT CTTACAAATC TGATATGAGA AGGAATCAGT
    CAGCGAATGA TTTCAGGGCA TCGGGAAATA GAGAAGGTGC ACATGTGAAG
    TCAAAGTCGT CGGAGGATAT CTACACGCGA TCGCAGCTTG AGGCTTCTGC
    CGCTGGGAAA GAGAGTTTCT TCGCGAGGAG AATGGCGGAG AATGAGTCTA
    AGCCTGAAGG TCTTCCTCCT TCGCAAGGTG GCAAGTATGT AGGATTCGGA
    TCAAGCTCGG CTCCACCACC GAGAAATAAT CAACAGGATG ATGTTTTCTC
    CGTTGTTTCT CAGGGTTTTG GAAGACTGTC TCTGGTTGCT GCATCTGCAG
    CTCAGTCAGC TGCTAGTGTT GTTCAAACAG GAACCAAGGA GTTCACATCC
    AAGGTGAAGG AAGGTGGGTA TGATCACAAG GTGAGTGAAA CTGTAAATGT
    AGTTGCTAAT AAGACAACAG AGATAGGACA TAGGACATGG GGAATCATGA
    AAGGAGTAAT GGCAATGGCG ACACAGAAGG TAGAAGAGTT TACTAAAGAA
    GGATCAACAA GCTGGAATCA GCAGAGTGAA AATGAGGGCA ATGGTTACTA
    CCAGAACTTT GGAAATGGGA ACAAAGCAGC GAATTCATCT GTTGGAGGAG
    GAAGGCCACA ATCATCATCG ACAAGTGGTC ATTACAACAA CTCGCAGAAT
    TCAAATTCTT GGGATAGTTG GGGAGAGAAT GAGAATAAGA AGACAGAAGC
    AGTAGCTCCA AAGGGGTCAT CTGCTTCTAA TGATGATGAT GGTTGGACTG
    GTTGGGATGA TCATGATGCC AAAGATGATG GGTTCGATGG TCATTACCAA
    AGTGCAGGCG ATAAGAAATC TGCTGGTCAC AACGGGAAAT CAGACACCGC
    TTGGACTGGT GGAGGTTTTC TCTAAGGAAT GCCGGTGAGA AGTGTATAAT
    TAATTAAGGC TGGGACCATC GTGGTCTGAA TAGAAGATAA GAATGGTCTT
    CATCTTAAAA CCATGTTCAT CCATACCCAC AGGTCTGCGT TTTTCTTCAT
    AAGTTGGCGG TTTCTTGATA TCTCTTCTTC ATGTGTTAAG GAGTAACGTA
    TTTGTACAAG ATCCATAGCC GATTGTTTGC TAAAGATTTT CGGTTTTAGT
    CTTTCACAAT TTAAATTTAT CTTCAACTGT AACCACAACT GAACATTCTT
    TTTCTCAAAA TTGCCTTGTT CCGTTGTTCG TAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT1G42970.1 [+] show detail - glyceraldehyde-3-phosphate dehydrogenase B subunit
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Glyceraldehyde 3-phosphate dehydrogenase, active site 0
    HMMPanther Glyceraldehyde 3-phosphate dehydrogenase subfamily 3.2e-209
    superfamily Glyceraldehyde-3-phosphate dehydrogenase-like 1.2e-71
    superfamily NAD(P)-binding domain 4.3e-57
    HMMTigr Glyceraldehyde-3-phosphate dehydrogenase, type I 1.5e-191
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 1.3e-38
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 1.3e-38
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 1.3e-38
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 1.3e-38
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 1.3e-38
    HMMPfam Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain 3.9e-67
    HMMPfam Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain 1.6e-51
    HMMPfam Protein of unknown function CP12 0.000035
    HMMSmart Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain 1.6e-76
    Gene3D no description 2.8e-69

    See the detailed result >

    AT1G42970.1

    Model type
    Protein coding
    Short Description
    glyceraldehyde-3-phosphate dehydrogenase B subunit
    Curator Summary
    Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase that can use both NADH and NADPH to reduce 1,3-diphosphate glycerate. It forms A2B2 heterotetramers with GapA forms of the GADPH enzyme. These complexes are active in the light under reducing conditions, but show reduced NADPH-dependent activity in response to oxidized thioredoxins and increased NAD(H)/NADP(H) ratios due to the formation of inactive A8B8 hexadecamers.
    Computational Description
    glyceraldehyde-3-phosphate dehydrogenase B subunit (GAPB); FUNCTIONS IN: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828), Protein of unknown function CP12 (InterPro:IPR003823); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1); Has 24904 Blast hits to 24897 proteins in 6198 species: Archae - 41; Bacteria - 10859; Metazoa - 2228; Fungi - 2814; Plants - 3753; Viruses - 0; Other Eukaryotes - 5209 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR