F26023

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26023

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26023

Determination of introduced cDNA(s)

  • RAFL09-19-K24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-K24 - Resource: pda05523

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-K24 - full reading
    ACCTCATCAT TCTTCCTTCT GGTTAACTGA AAATGGAGTG TAGTTCAGTG 
    AGTGTACTAG GAATATTACT GGTATTTCCT CTCCTTCATA ACCTTGTCAC
    CATCTCCGGG CAGAATCTTC CGGCGGTGGG TTTGTTCACT TTCGGAGATT
    CCAACTTCGA CGCTGGAAAT AAAAAGTTCC TCACAAGTGC TCCACTTCCT
    CAAAACTTTT GGCCTTACGG TAAATCTCGA GATGACCCTA AGGGCAAGTT
    TTCTGATGGC AAAATTGTCC CGGACTTTAT TGCAAAATTC ATGGGGATAC
    CACACGATTT ACCGCCGGCG CTAAAACCCG GCACCGATGT GTCACGAGGA
    GCCAGCTTCG CCGTCGGGTC CGCTTCCATT CTTGGATCTC CAAAAGATTC
    TTTGGCTCTG AATCAACAAG TGAGGAAATT CAATCAGATG ATATCAAATT
    GGAAAGTGGA TTACATTCAG AAATCAGTGT TTATGATTAG CATTGGTATG
    GAAGATTACT ACAACTTTAC CAAAAACAAT CCTAATGCTG AAGTTTCTGC
    TCAACAAGCT TTCGTTACTT CTGTCACTAA CCGGTTTAAG AGTGATATCA
    ACTTGTTGTA TTCATCTGGA GCTAGTAAAT TCGTCGTACA CTTGCTAGCG
    CCATTAGGTT GTTTACCGAT CGCAAGACAA GAATTTAAAA CCGGTAACAA
    TTGTTACGAG AAACTCAATG ATTTGGCCAA ACAACACAAC GCTAAAATTG
    GACCGATTTT GAACGAAATG GCGGAAACTA AACCGGATTT CCAATTCACC
    GTTTTCGATT TCTACAACGT TATTCTTCGC AGGACACAAA GAAACATGAA
    CTACCGGTTT TCCGTGACGA ATATATCGTG TTGCGGTGTT GGGACGCATT
    ATGCATATGG TTGTGGTTTA CCTAACGTGC ACTCGAAGTT ATGCGAATAT
    CAAAGATCCT ACCTTTACTT CGACGCACGT CATAACACAG AGAAAGCACA
    AGAAGCGTTT GCTCATCTTA TCTTTGGAGC TGACCCAAAT GTTATCCAAC
    CTATGAATGT TCGTGAGCTC ATGGTGTATC CTGTTAATGA GCCTATGCGT
    GAGTTTTGGG AGGATCCAAT GGATGAGAAG TTATCGTTAG TCCAATACTA
    GTGGATCTGT CTACCTCGTT TAGTTCTTGA GCTCACTATT TTCTATCTCT
    AGATCACGTA CGAGCTCTTG GAATTTGTAA TGTATTGTTC TTAATTAGTT
    GCGAAGTAAA ATAATTAATA CTGTTTAAAC C

    Gene models with high sequence identity

    1. AT1G54020.2 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LATERAL SIGNALING TARGET PROTEIN 2 2.5e-10
    HMMPanther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 2.5e-10
    HMMPfam Lipase, GDSL 3.6e-47

    See the detailed result >

    AT1G54020.2

    Model type
    Protein coding
    Short Description
    GDSL-like Lipase/Acylhydrolase superfamily protein
    Computational Description
    GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G54010.1); Has 3048 Blast hits to 3018 proteins in 88 species: Archae - 0; Bacteria - 75; Metazoa - 0; Fungi - 2; Plants - 2967; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR