F26028

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26028

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26028

Determination of introduced cDNA(s)

  • RAFL09-68-B02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-68-B02 - Resource: pda06606

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-68-B02 - full reading
    AGCTTTCCAT AATTTGGAAA AAAGTGAATT GAAAAAAAGA ACAGTGACAC 
    TCTTGTTTCT ATAAATTGGT GAGACCGTCC TCAAAACCCC TTCGTCACCT
    TCAGTGTCTC TCTCTCAAGA TCTAGCTCCG GTCATGAAGT CGTCGGAATT
    CCAATACCAC GAGGAATACG TGAGAAATTC AAGAGGTGTA GAGTTGTTCG
    CATGTAGATG GATCCCATCT TCTTCGTCTT CTCCCAAAGC TCTGGTTTTC
    CTCTGCCATG GTTATGGAAT GGAGTGTAGC GACTCCATGA AAGAATGCGG
    AATCAGGCTG GCTTCAGCTG GATACGCGGT TTTTGGTATG GACTATGAAG
    GTCATGGAAG GTCCATGGGA TCTCGTTGCT ACATCAAGAA GTTTGCGAAT
    GTTGTGAATG ATTGCTATGA CTACTACACA TCTATTTGTG CGCAAGAGGA
    GTACATGGAC AAAGGCAGAT TCTTGTATGG AGAATCCATG GGAGGCGCAG
    TCACTTTATT GCTTCACAAA AAAGATCCTT TGTTTTGGAA CGGCGCCATT
    CTAGTTGCTC CAATGTGTAA GATATCTGAG AAGGTGAAGC CACACCCTAT
    AGTGATTAAT CTGTTAACTA GAGTCGAAGA AATCATACCT AAATGGAAAA
    TAGTTCCAAC AAAAGACGTG ATTGACGCTG CTTTCAAGGA CCTCGTCAAG
    CGAGAAGAGG TAAGGAACAA CAAGCTGATA TATCAAGACA AGCCTAGGCT
    CAAAACCGCA CTTGAGATGC TTAGGACAAG CATGAACCTA GAAGACACTC
    TCCACGAGAT AACAATGCCA TTCTTTGTAT TACACGGAGA AGCAGATACA
    GTGACGGATC CAGAGGTAAG CAAAGCTCTG TACGAGAAAG CTAGCACAAG
    GGACAAGACG CTCAAGTTGT ATCCAGGGAT GTGGCACGCT CTGACGTCAG
    GTGAGCCTGA CTGTAACGTG GACCTTGTTT TTGCTGACAT CATCAATTGG
    CTTGACCTTC GAACCGCTGA CCCTGCCTCT CTCACTGTCA CTCCTATACG
    AGTTGGTAAC ACTACGAGCG TCCAGAGGGT AACTACTGTT AACGGCGTTA
    GTAACGGTCA TAGGAGGCCT AAACGTCCCT TCTTCAATCT CCTTTGTGGT
    TTGAACCGTG GCCGTTTGGT TCCACGATCC ACTGTGTAAT AAAATTTTAT
    CAAGGCAAAC AAAAAACAAT TTATGAAAAA GAGAGTTATG ATTTTGTGTG
    AATTAAAAAA AGG

    Gene models with high sequence identity

    1. AT2G47630.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Hydrolase_4 1.5e-20
    superfamily alpha/beta-Hydrolases 1e-41
    Gene3D no description 1.2e-25
    HMMPanther LYSOPHOSPHOLIPASE 1.8e-202
    HMMPanther PHOSPHOLIPASE-RELATED 1.8e-202

    See the detailed result >

    AT2G47630.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G62860.1); Has 2891 Blast hits to 2889 proteins in 983 species: Archae - 32; Bacteria - 1864; Metazoa - 111; Fungi - 108; Plants - 454; Viruses - 50; Other Eukaryotes - 272 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR