F26028

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26028

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26028

Determination of introduced cDNA(s)

  • RAFL09-68-B02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-68-B02 - Resource: pda06606

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-68-B02 - full reading 
    AGCTTTCCAT AATTTGGAAA AAAGTGAATT GAAAAAAAGA ACAGTGACAC 
    TCTTGTTTCT ATAAATTGGT GAGACCGTCC TCAAAACCCC TTCGTCACCT 
    TCAGTGTCTC TCTCTCAAGA TCTAGCTCCG GTCATGAAGT CGTCGGAATT 
    CCAATACCAC GAGGAATACG TGAGAAATTC AAGAGGTGTA GAGTTGTTCG 
    CATGTAGATG GATCCCATCT TCTTCGTCTT CTCCCAAAGC TCTGGTTTTC 
    CTCTGCCATG GTTATGGAAT GGAGTGTAGC GACTCCATGA AAGAATGCGG 
    AATCAGGCTG GCTTCAGCTG GATACGCGGT TTTTGGTATG GACTATGAAG 
    GTCATGGAAG GTCCATGGGA TCTCGTTGCT ACATCAAGAA GTTTGCGAAT 
    GTTGTGAATG ATTGCTATGA CTACTACACA TCTATTTGTG CGCAAGAGGA 
    GTACATGGAC AAAGGCAGAT TCTTGTATGG AGAATCCATG GGAGGCGCAG 
    TCACTTTATT GCTTCACAAA AAAGATCCTT TGTTTTGGAA CGGCGCCATT 
    CTAGTTGCTC CAATGTGTAA GATATCTGAG AAGGTGAAGC CACACCCTAT 
    AGTGATTAAT CTGTTAACTA GAGTCGAAGA AATCATACCT AAATGGAAAA 
    TAGTTCCAAC AAAAGACGTG ATTGACGCTG CTTTCAAGGA CCTCGTCAAG 
    CGAGAAGAGG TAAGGAACAA CAAGCTGATA TATCAAGACA AGCCTAGGCT 
    CAAAACCGCA CTTGAGATGC TTAGGACAAG CATGAACCTA GAAGACACTC 
    TCCACGAGAT AACAATGCCA TTCTTTGTAT TACACGGAGA AGCAGATACA 
    GTGACGGATC CAGAGGTAAG CAAAGCTCTG TACGAGAAAG CTAGCACAAG 
    GGACAAGACG CTCAAGTTGT ATCCAGGGAT GTGGCACGCT CTGACGTCAG 
    GTGAGCCTGA CTGTAACGTG GACCTTGTTT TTGCTGACAT CATCAATTGG 
    CTTGACCTTC GAACCGCTGA CCCTGCCTCT CTCACTGTCA CTCCTATACG 
    AGTTGGTAAC ACTACGAGCG TCCAGAGGGT AACTACTGTT AACGGCGTTA 
    GTAACGGTCA TAGGAGGCCT AAACGTCCCT TCTTCAATCT CCTTTGTGGT 
    TTGAACCGTG GCCGTTTGGT TCCACGATCC ACTGTGTAAT AAAATTTTAT 
    CAAGGCAAAC AAAAAACAAT TTATGAAAAA GAGAGTTATG ATTTTGTGTG 
    AATTAAAAAA AGG

    Gene models with high sequence identity

    1. AT2G47630.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Hydrolase_4 1.5e-20
    superfamily alpha/beta-Hydrolases 1e-41
    Gene3D no description 1.2e-25
    HMMPanther LYSOPHOSPHOLIPASE 1.8e-202
    HMMPanther PHOSPHOLIPASE-RELATED 1.8e-202

    See the detailed result >

    AT2G47630.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G62860.1); Has 2891 Blast hits to 2889 proteins in 983 species: Archae - 32; Bacteria - 1864; Metazoa - 111; Fungi - 108; Plants - 454; Viruses - 50; Other Eukaryotes - 272 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR