F26030

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26030

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26030

Determination of introduced cDNA(s)

  • RAFL05-17-L23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-L23 - Resource: pdz87513

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-17-L23 - 5 prime EST 
    AAAATCCTCA GCCGCATCTC ACTTCTCATT CTCTAGAAAA AATGGCTTCG 
    TCTTGTCTCT TCAATGCCTC TGTATCGTCC TTAAACCCTA AACAAGACCC 
    CATCCGCCGC CACCGGTCAA CCTCTCTCCT CCGCCACCGC CCCGTCGTCA 
    TCTCCTGTAC CGCCGATGGC AACAACATCA AAGCCCCGAT CGAGACAGCG 
    GTCAAGCCTC CTCACCGTAC CGAGGATAAC ATTCGAGATG AGGCTCGTCG 
    TAATCGTTCC AACGCCGTGA ATCCATTTTC AGCTAAATAC GTTCCGTTTA 
    ATGCAGCTCC TGGATCCACG GAGTCTTACT CTNTTGACGA GATCGNGTAC 
    CGTAGCCGCT CCGGTGGTTT GCNTGATGTC

    Gene models with high sequence identity

    1. AT4G29840.1 [+] show detail - Pyridoxal-5'-phosphate-dependent enzyme family protein
      E-value: 0; Score: 98.95

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-17-L23 - 3 prime EST 
    GATTCAAACT TTGCGATAGA ACTTTATTGG AAAACTGAGA AACAGATAAA 
    GATCACAGAG AGATGAGTTG AAGAGTAACG CAAACAAACG TCTAAAAGTT 
    TTCAAAAAAC AAAACAGCTA AAGATTATGG TCTTGTCTCT TATGACGTAA 
    GTGTATTACT TCCTAAGTAA CTCTTGAGAA CATCCATGAC AGCTCCGAAA 
    TCTGCTTTCA CATCAACAGG AGGATTGGAG AATCTGCAAG CCATGTCAGG 
    GATGGCATTG GAGTGATAAT CTATCTTAGA CTGAGTAAAC TTCAACCCAT 
    GAGCAGTACT CACTACCATA GTTCGATCAG TCGGTGCAAT CACTCCTTGA 
    TTCCTCAGCT TGAACAGAGC AGTTAGAGCA ACACCTGTAT GAGGACAGAT 
    AAACATTCCT GTCGAATCCG CTTGAGCCAT CGCATCCATC AGCTCCTCCT 
    CTGTGGCTTC TTCTACAATA CCATTGCACT TCTTGAGAGC GTACACAGCT 
    CTATCGATGG AGACAGGGTC ACCGATCTGA ATCGCA

    Gene models with high sequence identity

    1. AT4G29840.1 [+] show detail - Pyridoxal-5'-phosphate-dependent enzyme family protein
      E-value: 0; Score: 99.81

    AT4G29840.1

    Model type
    Protein coding
    Short Description
    Pyridoxal-5'-phosphate-dependent enzyme family protein
    Curator Summary
    threonine synthase
    Computational Description
    METHIONINE OVER-ACCUMULATOR 2 (MTO2); FUNCTIONS IN: threonine synthase activity; INVOLVED IN: threonine biosynthetic process, metabolic process, cellular amino acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Threonine synthase (InterPro:IPR004450), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Serine/threonine dehydratase, pyridoxal-phosphate-binding site (InterPro:IPR000634); BEST Arabidopsis thaliana protein match is: Pyridoxal-5'-phosphate-dependent enzyme family protein (TAIR:AT1G72810.1); Has 6824 Blast hits to 6824 proteins in 2025 species: Archae - 409; Bacteria - 4266; Metazoa - 101; Fungi - 24; Plants - 83; Viruses - 0; Other Eukaryotes - 1941 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR