F26121

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26121

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26121

Determination of introduced cDNA(s)

  • RAFL09-89-M10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-89-M10 - Resource: pda06940

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-89-M10 - full reading
    AATTTTCCTT TTCTCCGATC AATTCCAAAA CCCTACTTCA ACCCTGCGAT 
    TCATTCATCA TTCACAGAGT TTGAAGAAAA CGCCGAAATC GGAAATGGCG
    TCTATTGTTC TTCGATCTCG CCTGTTGCCA AGATTAGCAA AGCTCAGATC
    TCGTAATCTG AGATGTTTCT CTGCGGAAGC ATCTTCGACG AATTCTACAT
    CTAGGTATTC GGGAGTCACC TCTACCCAGT CGATGTTTTC TGATTTTCCA
    CCGCCAAATC AGCCGCCACC TCCTCCTCCT CCTCAAGTGG AAGCTGCTGC
    CGCGGCTGCG ACGGGAAAGG AGAGGAAAGG TCTTAAGTAT CTTGGTTACG
    CACTCCTCTG GGCACTCACT GGTGCTACCG CTGCTACTGG TTACGCAAGT
    TTTGCTTACA CGATAGATGA AGTGAATGAA AAGACTAAGG CGTTCCGAGA
    ATCAGCTACG AAGACACCAG TTATTAAATC TTCTGGCATT GATGTGATTG
    ATAAATATCA GACTAAGTTG TACTCTGCTG CAATGACAGG TTCTGCTAGA
    GCCATTGATA AGTATTTAGA GCTTAGGGAA ATTGTGGAGG AACAAGTGAA
    AGGCTTCACG GAACCTCTCT CGGAAAAGCT TCTTCCGGAT CTGCACCCCG
    CAGAACAGCA TGTCTTCACT CTAGTTCTTG ATTTAAATGA GACACTGCTT
    TACACTGACT GGAAGCGGGA AAGAGGGTGG AGGACATTCA AAAGACCAGG
    TGTCGATGCA TTCTTGGAGC ATCTTGGGAA ATTCTATGAG ATTGTCGTGT
    ATTCTGACCA GATGGAGATG TATGTACTCC CGGTCTGTGA GAAATTAGAC
    CCAAATGGCT ACATACGTTA TAAGCTAGCA AGAGGCGCTA CTAAATATGA
    AAATGGAAAG CACTATAGGG ATCTGTCAAA GCTGAACAGA GATCCGAAGA
    AGATTCTGTT TGTTAGCGCA AATGCCTTTG AATCAACCCT TCAGCCAGAA
    AATAGCGTGC CAATCAAGCC TTACAAACTA GAAGCTGATG ACACAGCCCT
    AGTTGACCTG ATACCCTTCC TTGAATATGT TGCACGTAAC AGTCCAGCAG
    ACATCAGACC GGTTCTGGCC TCTTTTGAGA GAAAAGATAT TGCCAAAGAG
    TTCATTGACA GGTCCATAGA GTATCAAAAG CGAAAGCAAG GACAACTGGG
    ACAAGGTCGA TTCTGGAGGC GTTAAAGGAT CTAAGATTTA TGTATAGAGC
    GAGAGACAAT TATATCATCA TTGATGGTGC ACACCATAAA ATAGGAACAT
    GAGCTACCGT TCTTCGCTAT GGATTTATTA GGTAAAATCC GAATTAAAAT
    ACTGTCTTTG TCATCAAAGA GTTTTTATGT TACCCAATTT TCCTCGTCTT
    TCTCTCTGCT TTACATAGAA AATTTCTATG AGAACGAAAA AGAAATTATC
    ATATGGAAGG TTCATTTTTC GTTGACTAAT AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT1G55900.1 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 7.1e-44
    HMMPanther TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 5 7.8e-99
    HMMPanther NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-REL 7.8e-99
    HMMPfam NLI interacting factor 1.9e-36
    ProfileScan NLI interacting factor 36.986
    superfamily HAD-like 7.7e-46
    HMMSmart NLI interacting factor 3.6e-50

    See the detailed result >

    AT1G55900.1

    Model type
    Protein coding
    Short Description
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    Curator Summary
    component of a translocase in the mitochondrial inner membrane
    Computational Description
    TIM50; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G29780.1); Has 2137 Blast hits to 2133 proteins in 243 species: Archae - 0; Bacteria - 8; Metazoa - 726; Fungi - 412; Plants - 369; Viruses - 0; Other Eukaryotes - 622 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR