F26133

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26133

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26133

Determination of introduced cDNA(s)

  • RAFL09-59-A21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-59-A21 - Resource: pda06565

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-59-A21 - full reading 
    AAAACCCTAA TCTCTGTACT CTCTCTTCCT CAATCCCTCC CATGACCACC 
    GCAGTTTCGC CGCCGCCGCC GCAGGAGCAG CAACTTGTTC ACGCTTCGCA 
    GACTTCAAGA GTGAGTCCCA AGACAGTGGA GAGCGCCCTC AATGGTCTTA 
    TCAATTGGAG AAGCGACAAA TCAAAGACAG AGAAGCCTCA ACTTCTCGAA 
    GAAGACGAGC TCGTCTACCT TTTCGTTACT TTGAAGAAGA TTCCACAGAA 
    GACCCGTACG AATGCTTACC GTATCCCTTT ACCTCATCCT CTTATCAACC 
    CGACGGTCGA TTCGCCGGAG ATTTGTCTCA TCATCGACGA CAGACCTAAA 
    AGTGGTCTCA CCAAAGATGA TGCGATGAAG AAGATCAAAT CTGAGAATAT 
    TCCAATCACC AAGGTTATTA AGCTTTCGAA ACTGAAGAGT GATTACAAGG 
    CGTTCGAAGC GAAGAGGAAA CTCTGCGACT CTTACGACAT GTTTTTCACT 
    GATCGGAGGA TCATTCCTCT GCTGCCGAGG GTGATTGGGA AGAAGTTCTT 
    TACGAGCAAG AAGATTCCGG TGGCGCTTGA TTTGAAGCAC AGGAACTGGA 
    AACATCAGAT AGAGAAAGCT TGTGGATCTG CTATGTTCTT CATAAGGACT 
    GGGACGTGTA GTGTCATTAA GGTTGGGAAA TTGTCTATGG ATATTTGTGA 
    AATTACTGAG AATGTGATGG CGACATTGAA TGGACTAGTT GAGTTCTTGC 
    CTAATAAGTG GACGTACGTT AGGTCTTTGC ATTTGAAGTT GTCTGAGAGT 
    TTAGCTTTGC CTATATATCA GTCTGTTCCT GATTTGAAGC TTAAAATCGA 
    TGCTTTTGGG TCTGGAAAGA GTGTTGTTCA GGAGGAGAAG GAAGGTGAAG 
    TTGAAGAAGT TGTTGCTGTT GATGGTGGAG AGAAGAGTGT TACAGGGAAG 
    GGAAAGAAGA AGAAAGGTAG GATTCACGAG GTTAGGTATA TGGATAGTAA 
    TGTAGCTGAG GTGCTTGATG AGGATGAGAT TGGTGGTGAC GAGGATAATA 
    ATGAGATTGT TGAGTCTGAG GAGAAGAAGA TGAAGAAGAG GAAGAAGGAG 
    GTAAGTGAAG TTGCAGAGAG TGAGAAGCCG ATGAAGAAAG CTGCCAAAGG 
    GAAGTTGAAA CCTGATGTTG AGAAACCGAT GAAGAAAGCT GCCAAAGGGA 
    AGTCGAAACC CGATGTTGAG AAACCTATGC AGAAAGCTGC GGTCAAGGGG 
    AAAGTTAAAC CAGATGTTGT GAAGCTGGAG AAGAGCAAGG ACGGCTTAAA 
    GGCGAAAAAG ACAACAATGG TTGCGAAAGA CGAATCTGGT GGTGGATTGA 
    AGCCGAAGAG AAAGAGTGTG CTTAGGAAAT GAGGCAGAGG AAGGTCTTGA 
    GTGTTTGCTT TTGAGTATGA TTTATGTTTT ATTTTCTATC GTAGTTCTTA 
    TTACATTTTT GAGCCATTTC ATATCTTGTA CTACTTCTAT GAAACATTGA 
    ACTGGTGAAT GTGGGTTTGA TGGTTTTGTG GAGGAAACAT ACTACTGTTC 
    ACCTTTTAAC TTTTTAAAGG TTTTTCTTTC CAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT3G58660.1 [+] show detail - Ribosomal protein L1p/L10e family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein L1 1.3e-46
    HMMPfam Ribosomal protein L1 5.3e-13
    HMMPanther PBK1-RELATED 4.1e-94
    HMMPanther RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 4.1e-94
    Gene3D Ribosomal protein L1, 2-layer alpha/beta-sandwich 0.00015

    See the detailed result >

    AT3G58660.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L1p/L10e family
    Computational Description
    Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42650.1); Has 3644 Blast hits to 2818 proteins in 411 species: Archae - 34; Bacteria - 198; Metazoa - 1370; Fungi - 494; Plants - 482; Viruses - 5; Other Eukaryotes - 1061 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR