F26136

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26136

Determination of introduced cDNA(s)

RAFL08-19-H17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-19-H17 - Resource: pda07938

full reading [+] show sequence

AACCAAGTCA ATCATTCTTC ATTGATCTTC TCCGATTTGA AATCGCCGGC 
GAAAATGGAA TCCTCCGGCG ACAAGCAAAC TTCTTCTCTT TACCCTACTG 
TTGACACATC CAATCCCGAA GCTCCTATAA ACCCTAGCTC ATCATCTTCT 
ACTAACAATC TCTATCCTTC TCTCGATATG AATGATCTCG CTCGTAATCT 
CTTCCCTGAA CAACCAGAGA CGAGTTCTAT TCCGGTTTCA GCTCCTCCCG 
CTGCGACGGA GGAAGTAATT TTGAAAATCT CCGGCGCGAT TCTTCATTTA 
ATCGACAAAT CTTACAGCGT CGAGCTCGCT TGCGGTGATC TTGAGATCAT 
CCGTATTGTT CAAGGAGAGA ATGTTGTCGC TGTTCTCGCT AGTGTCTCCG 
ATGAGATTCA ATGGCCGTTG ACTAAGGATG AGAACTCTGT CAAGGTCGAT 
GAGTCTCATT ACTTCTTCAC GCTTCGTCCT ACCAAAGAGA TCTCACATGA 
TTCAAGCGAC GAAGAAGACG GAGATGGAGG GAAAAACACT AACGAGATGT 
TGAACTACGG ACTTACAATT GCTTCTAAAG GTCAAGAGCA TTTACTGGTG 
GAGCTTGAGA AGATCTTGGA GGATTATAGT AGTTTCTCTG TGCAGGAGGT 
GTCAGAGGAA GCGAAGGAAG CAGGTGAAAA GGTTTTGGAT GTGACGGTGG 
CGAGAGAGAC GTCTCCGGTG GAGCTTACTG GGGAAAGGAA AGAGATTGTG 
GAGAGGCAAT GTTCTGCTTA TTGGACTACT TTGGCTCCGA ATGTGGAGGA 
TTATAGCGGG AAGGCGGCGA AGCTGATTGC AACTGGCTCA GGACATTTGA 
TAAAAGGGAT TCTTTGGTGT GGAGATGTGA CTATGGATAG GCTTATTTGG 
GGAAATGGTT TCATGAAAAG GAGGTTGTCA AAGGCTGAGA AGGAGAGTGA 
AGTTCACCCT GACACCTTGA AAAGAATCAG AAGAGTGAAG AGGATGACCA 
AAATGACAGA GAGTGTAGCA AACAGCATAC TGTCTGGAGT CCTTAAAGTT 
TCTGGATTCT TCACAAGTTC AGTGGCAAAC ACCAAAGTAG GAAAGAAATT 
CTTCAGCCTT CTTCCTGGAG AAGTCATCCT TGCATCTCTT GACGGATTCA 
ATAAGGTCTG TGACGCTGTT GAAGTAGCTG GGAGGAATGT AATGTCAACC 
TCTTCCACTG TTACAACCGA ACTCGTTGAT CACAAGTATG GTGGTAAAGC 
GGCTGAGGCG ACAAACGAAG GGCTCGATGC AGCAGGATAT GCGCTTGGCA 
CAGCCTGGGT TGCTTTCAAA ATAAGAAAGG CTATTAACCC GAAGAGTGTA 
CTCAAGCCTT CGACGCTTGC AAAAACCGCC ATTAGATCTG CAGCTTCACA 
AAAAAAAGCC TAGTAAGGCT GCCTGATGAA GCAAAACAGA CTCATTGGTC 
CTGTTTGTTT GTATCGTCTT GTTGTCTTTT GATAAATAAG TTAAACTAAA 
AAGAGGTGTG GATTAGTAGT TGTTGTGAAG TGTTTATGTT TCTCTATGAG 
AATCATGTAA TGTCTCTGAT TTGATTCGGA ATATGTGCTG TATGTGTAAG 
TGGTCAAATC AAGATTCCTT GAAATTAGTT TTCATGTTTT TTT

Gene models with high sequence identity

AT2G17840.1 [+] show detail - Senescence/dehydration-associated protein-related
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SUBFAMILY NOT NAMED	0
HMMPanther	FAMILY NOT NAMED	0
HMMPfam	Senescence/spartin-associated	3.1e-176

See the detailed result >

AT2G17840.1

Model type: Protein coding
Short Description: Senescence/dehydration-associated protein-related
Curator Summary: Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.
Computational Description: EARLY-RESPONSIVE TO DEHYDRATION 7 (ERD7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to high light intensity, response to salt stress, response to cold; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT4G35985.1); Has 250 Blast hits to 250 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 39; Plants - 134; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link: InterPro Scan - TAIR