F26141

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26141

Determination of introduced cDNA(s)

RAFL09-84-C16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-84-C16 - Resource: pda09963

full reading [+] show sequence

ATTCTCTTTC TCTCTATCTA TCATCATCAT CCTCGTAATC CTCTCCTTTC 
TCCTTCAGAC CCCTCCTAGT TGCTGTTTAA ACAAACAAAA AAAGACTGCT 
TCTCTTTCTT ATTTCTCTCA TCATCATCAT CAATGGTTTT ATGAGATTTA 
TATCAAAAAA CATTGAGGAG CTAGAGAGAA AGAGAGAGTG TGTGTGTAGA 
AAAAGATTGA AACATCATCA AGATTGATGG AGCAAGGAGG AGGTGGTGGT 
GGTAATGAAG TTGTGGAGGA AGCTTCACCT ATTAGTTCAA GACCTCCTGC 
TAACAACTTA GAAGAGCTTA TGAGATTCTC AGCCGCCGCG GATGACGGTG 
GATTAGGAGG TGGAGGTGGA GGAGGAGGAG GAGGAAGTGC TTCTTCTTCA 
TCGGGAAATC GATGGCCGAG AGAAGAAACT TTAGCTCTTC TTCGGATCCG 
ATCCGATATG GATTCTACTT TTCGTGATGC TACTCTCAAA GCTCCTCTTT 
GGGAACATGT TTCCAGGAAG CTATTGGAGT TAGGTTACAA ACGAAGTTCA 
AAGAAATGCA AAGAGAAATT CGAAAACGTT CAGAAATATT ACAAACGTAC 
TAAAGAAACT CGCGGTGGTC GTCATGATGG TAAAGCTTAC AAGTTCTTCT 
CTCAGCTTGA AGCTCTCAAC ACTACTCCTC CTTCTCATCC TCACGCTCAT 
CAACCAGAAC AGAAACAACA ACAACAACCA CAACAAGAGA TGGTCATGAG 
CTCGGAACAA TCATCATTAC CATCATCATC AAGATGGCCA AAGGCAGAGA 
TTCTAGCGCT TATAAACCTG AGAAGTGGAA TGGAACCAAG GTACCAAGAT 
AATGTACCTA AAGGACTTCT ATGGGAAGAG ATCTCAACTT CAATGAAGAG 
AATGGGATAC AACAGAAACG CTAAGAGATG TAAAGAGAAA TGGGAAAACA 
TAAACAAATA CTACAAGAAA GTTAAAGAAA GCAACAAGAA ACGTCCTCAA 
GATGCTAAGA CTTGTCCTTA CTTTCACCGC CTCGATCTTC TTTACCGCAA 
CAAAGTACTC GGTAGTGGCG GTGGTTCTAG CACTTCTGGT CTACCTCAAG 
ACCAAAAACA GAGTCCGGTC ACTGCGATGA AACCGCCACA AGAAGGACTT 
GTTAATGTTC AACAAACTCA TGGGTCAGCT TCAACTGAGG AAGAAGAGCC 
TATAGAGGAA AGTCCACAAG GAACAGAAAA GAAGACCTTG TGATGAGAGA 
GCTGATTCAA CAACAACAGC AACTACAACA ACAAGAATCA ATGATAGGTG 
AGTATGAAAA GATTGAAGAG TCTCACAATT ATAATAACAT GGAGGAAGAG 
GAAGATCAGG AAATGGATGA GGAAGAACTA GACGAGGATG AGAAGTCCGC 
GGCTTTCGAG ATTGCGTTTC AAAGCCCTGC AAACAGAGGA GGCAATGGCC 
ATACGGAACC ACCTTTCTTG ACAATGGTTC AGTAAAATCA GAATCATTGT 
TTCAAGAAAA TGTACTTATG TGTGCATAGT TTTCTAAACA AAACACCCAA 
AAACACAAAA CACAAACACA CACACACACA CATCTGACAC CACAAACTGA 
AATATCAAGG TCTCATCGAT CTTCGATTTT TCAGTGAATA CAATTCTTTT 
TCACATTCTT TCCCTTTTGT TCTTTTCTTT CTCACTGTCT CTTGTTTGTT 
TCTTCTTGTT CATTGTTTTC TTCTTCCAAC CCCCACATGA ACAAAAAACT 
CTAGCTAAAA GGTCTTTTAG ATT

Gene models with high sequence identity

AT1G33240.1 [+] show detail - GT-2-like 1
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	MYB-like	6.934
ProfileScan	MYB-like	6.667
Coil	coiled-coil	0
HMMSmart	SANT, DNA-binding	0.015
HMMSmart	SANT, DNA-binding	0.011

See the detailed result >

AT1G33240.1

Model type: Protein coding
Short Description: GT-2-like 1
Curator Summary: Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone. Regulates ploidy-dependent cell growth in trichome.
Computational Description: GT-2-like 1 (GTL1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT1G76890.2); Has 6156 Blast hits to 4698 proteins in 415 species: Archae - 8; Bacteria - 243; Metazoa - 2333; Fungi - 696; Plants - 1321; Viruses - 126; Other Eukaryotes - 1429 (source: NCBI BLink).
Link: InterPro Scan - TAIR