F26232

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26232

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F26232

Determination of introduced cDNA(s)

  • RAFL02-03-L10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-03-L10 - Resource: pda00256

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-03-L10 - full reading 
    ACTAGGGTTT CCGTACTGAA TCAACTTCAT CAGTTCGTTT CGTTGTCAAA 
    AGCAAAGCAG AGCAAGTTTT ATTTTCCCTC CAAAATTCTA AGTTGATCTT 
    CACTTTTTGA TGGCGTCGCG GTTTCAGGAA GCTTCACTGG TTACTTCACC 
    GTCGTATCCT AACGCCGTCG CTTGGTCATC GGAAAATCTC ATCGCCGTCG 
    CTGCTGGTCA TCTAGTCATC ATCATTAATC CGGCTTTGCC TACTGGCCCT 
    CGTGGATTGA TCACAATCTC TGACGCCGAG CTTTATCAGA TTGGTCGTGT 
    TCGCTCTCAA GATTTGCTAA CTGGTGGACT CTTGCCTTCG AGTTTGAAGC 
    GGGAAAGAAG TCCATGTGTT CGATCTCTCT CATGGTCTGA GATAGGAATG 
    TCTCCAAACC ACGGGTGCTT ACTGGCTGTT TGCACAGCGG AAGGAAGGGT 
    TAAGCTATAC CGACCTCCAT ATTCTGATTT CTGTGCTGAG TGGATTGAGA 
    TTGTTGATAT ATCTAAAATG CTTTATGAGA ATCTATCAAG CATGAACTTT 
    GGAGAGTCCA AAAATCCTTC TACTTCATTA TCTAAGGATC AAGTGGTAGA 
    ACATGACCAT GAGGAGGATG AAAGGATTTC AAGTCTGAAG GCACGCAAGC 
    GAAGAAAAAC AAGTGCAAAT AACATCAACT TGCATGAAAA GAATTATACA 
    GATCGAGCAT CATGTTCCAA GCAAGACAGT AAAGCAGAGC ATAATGTACT 
    TGAGATTGAA GTATATAAAC AGGCAAGCAA TGGCCAAGAT CGTCGTTCCT 
    TGCCTAAAGC TCTAAAAAAA TGCAGTCAAG AGATAAGTCC GCAAACGTAT 
    GTGTCTCGTG AGGCATTATT ATCCTCCCAT TCCGTTGCCT GGTCATCTCT 
    TCTAAGATTC TCATCAGAAA GTTCTTGTGG GAATATGTTA AGATTCTCTC 
    TTTTGGCAAT TGGTTCAAAG TCCGGGAGCG TTTCCATATG GAAAGTTCAT 
    GCACCTGAAT GCTATCACAT TGAACGCAGC AATGTATCTC CCATGGTGGA 
    ACTTACTGCT ATAGTTCAGA CCCATAGCTC ATGGGTTTCA ACAATGAGTT 
    GGGGAATTTT TGGCTGTGAT TCTTCGAATC CGCAAGTGGT GTTGGTTACT 
    GGGAGTTGTG ATGGTAGTGT GAAAATTTGG ATGAGCAACA AAGAAGACTT 
    GCAAAATTCT GTGGAGGTCT ATAAATCTTC ATTCTTTCTA CTAAAAGAGG 
    TTGTAGCAGT GAATCCTGTT CAGGTTTCAA CGCTTTCTTT TGTTGTAAGC 
    AACCATTATA ATGCAATGCA CTTGGCAATC GGTAAAGGAT CTGGTTCTTT 
    CGAAGTATGG AAGTGTGAAA TATCTACAAG AAAGTTTGAA CAAATTGTTT 
    CAACTAATGC TCATAACCAA GTGGTTACAG GTCTAGCTTG GTCATATGAT 
    GGCCGTTGTT TGTACAGTTG CAGTCAGGAT AATTATGTCC GGAGCTGGAT 
    TTTATGTGAG AATGCCATCT CTGAAGTGCC AATTCCTGCA AACACTCCTG 
    GTCTCAGTAG CACGACTGAT CTTCCTGATG ATTTTCTATC ATGCCTTGGT 
    GTGGCATTGT CACCTGGAAA CCTTGCTGTT GCTTTGGTCC GCAACTTTAA 
    CGTTGAACTC TTGAATCCAA TGTACCAAGC CAGGTCGCAG AAGGCTGCTG 
    TAGAATTCCT CTGGAATGGT GCACAACAAT CTGGTGAGTC AGAAGATTCT 
    ACAGAGACGG TAACCGAAGC TATTCTGGGT TTCTCAAAGA ATGAATTCGC 
    AAATTGGGAA TCCAATATTC TCTGGTCGTT AAAAGAATTC AACTATTTGA 
    ATAAGCCTCT AGTTCTTTGG GATATGGTAG CTGCAATGCT GGCGTTCAAA 
    CAATCAATGC CAGAGTTTGT TGAATTAGTA TTAACTAAAT GGCTCTCTGT 
    GTCATACCTT GGATTTCATG ATGATATCTC CATGGAAGAT CTCGTGCCAA 
    AGATCACCAA ACGCTTCTCT GATGTTCCTT CCAGGCTGTT ACACATTCTC 
    AACGTAATCT CTAGACGTGT AATGTTATCG GAACTCAAAA CAGAAGAAAT 
    CAACAGAAAA CTGCAAGGTC AGAGAACGAA CGATGAAGGA GAAATTGATC 
    TGTGGCTCAA ACTGCTTCAA GAAAGTGAAC GAGAACTCCG AGAAAGACTG 
    GTTGGTCTCA GTTTCTCGGC TTATTTACTC GCTGAGTCAT CTCAGGGTAC 
    TATTTCGCCT CCCTCTTGGA ATTGGCGTCC AGCTGGATTG GCTCTGTTGC 
    AACAATGGGT TGAGATAAAT CGTGATATTG TCCATAGTCA GCTGGAAACA 
    CTTTCCTTAG AAGTAAAATC TAGTCGAACG AGATCAAGTA ATAGCACAGA 
    AACTGCATTA GAGGAAGAGA AATGTCCTTA TTGTGCAGCG CCAGTAAATT 
    TCCACTCAGC AGAGGAAGCC TTTTGCGAAT CTTCGCACC

    Gene models with high sequence identity

    1. AT3G49400.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily WD40 repeat-like-containing domain 1.1e-20
    HMMPanther SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPT 0.00055
    Gene3D WD40/YVTN repeat-like-containing domain 2.1e-16
    ProfileScan WD40 repeat 2 10.742
    ProfileScan WD40-repeat-containing domain 9.678
    HMMPfam WD40 repeat, subgroup 0.0012
    HMMPfam WD40 repeat, subgroup 4.8e-06
    HMMSmart WD40 repeat 280
    HMMSmart WD40 repeat 41
    HMMSmart WD40 repeat 410
    HMMSmart WD40 repeat 0.019
    HMMSmart WD40 repeat 0.0011

    See the detailed result >

    AT3G49400.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, sperm cell, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 959 Blast hits to 868 proteins in 197 species: Archae - 0; Bacteria - 241; Metazoa - 222; Fungi - 181; Plants - 154; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR