F26322

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26322

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26322

Determination of introduced cDNA(s)

  • RAFL14-20-P19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-20-P19 - Resource: pdz88435

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL14-20-P19 - 5 prime EST 
    AACCGGATCT TCTCAAACTA AATCAATTAA AGAGGTTTCT TCTTATAGAA 
    ATGAATTTCT CTTATTCTTC CTTGTCAACT TGGACAACCC TAATGACATT 
    GGGTTGTCTT CTGCTTCATT CATCCATTTC CAGTGCTCAG CTAACCCCAA 
    CTTTCTATGA CAATACATGT CCAAGCGTCT TTACCATCGT ACGGGATACC 
    ATAGTAAACG AGCTAAGATC GGATCCTCGT ATCGCTGCAA GCATCCTTCG 
    TCTTCACTTC CACGACTGTT TCGTCAATGG CTGTGATGCA TCGATCCTGT 
    TAGACAACAC AACATCCTTT CGAACAGAGA AAGATGCGGC TCCAAACGCA 
    AACTCGGCTC GAGGATTTCC AGTGATCGAT AGAATGAAAG CAGCAGTAGA 
    GACAGCATGT CCAAGGACTG TTTCATGCGC AGATATACTT ACCATCGCAG 
    CTCAACAAGC TGTAAATTTG GCAGGAGGTC CTTCTTGGAG GGTTCCTTTG 
    GGGAGAAGAG ATAGCTTACA AGCATTCTTT GCTCTCGCTA ATACAAATCT 
    TCCCGCTCCA TTCTTCACTC TCCCACAACT TAAGGCCAGT TTTCAAAATG 
    TTGGACTTGA CCGTCCCTCT GATCTCGTTG CACTCTCTGG TGGTCACACA 
    TTTGGTAAAA

    Gene models with high sequence identity

    1. AT3G32980.1 [+] show detail - Peroxidase superfamily protein
      E-value: 0; Score: 100.00

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL14-20-P19 - 3 prime EST 
    CCAACATTAC ATTATTAAGA TTCAAAAACA TAATACAACT TGAAAACACA 
    TGAGAGAGAT GATCACACAG CATTGATGAT TTATAAAAAA CAAGACCATA 
    GATCCAAGTA AAAGGACTTG TTAGAAGATT AGATGCATTG ATCAGTCCAT 
    GAAAAGTATC AGTTGTGTCT GCAAGCAATG TAGCTGGCAA GAGCCACCAA 
    AGGGGCCGCC TTACTTGGAT CAAACCCTAG AAGCTGTTCC TCTGGTTCTC 
    TCCTCAGTTT CTCTGAAACT TCCCTGGATC CCTCCAAACC TATAAGCCTT 
    GGATACGTCA GCTTTCCGGC CATTACGTCT TTTCCGGCTG TGTTACCCAA 
    TTCCTAAGTA GATTTGGTTA GGTCGAGAAT GTCATCAACA ACCTGAAACA 
    GTAGTCAATA CACCTAGGAT ACTTTCTAAG T

    Gene models with high sequence identity

    1. AT3G14530.1 [+] show detail - Terpenoid synthases superfamily protein
      E-value: 0; Score: 97.68

    AT3G14530.1

    Model type
    Protein coding
    Short Description
    Terpenoid synthases superfamily protein
    Computational Description
    Terpenoid synthases superfamily protein; FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase 3 (TAIR:AT3G14550.1); Has 16918 Blast hits to 16911 proteins in 2965 species: Archae - 341; Bacteria - 9533; Metazoa - 310; Fungi - 484; Plants - 460; Viruses - 12; Other Eukaryotes - 5778 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT3G32980.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase CB (TAIR:AT3G49120.1); Has 4309 Blast hits to 4278 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 49; Plants - 4212; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR