F26333

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26333

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Seed::deep brown
Seed::deep red

Original: F26333

Determination of introduced cDNA(s)

RAFL04-15-C24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-C24 - Resource: pdz87383

5 prime EST [+] show sequence

GGTCTCTCTT CACTCGCCGG AGAGAGAGAA GAAGAAAAGA CGACGGAGAA 
ATGGCGGAGG AGCAGAAAAT GAAGCAGCTA AGCCGATTCT GGATTTGGGC 
TTTATCTTCC ATTGCTTTCC GATTGATCTT GATCTCCTTC CCGGGAAATC 
TCAATCTCTC TTCCCGTCCG GAGGTCTCTA CCCCTCTCAC CAGCATTCGC 
CGCCGTATCT CCTCTCTCTT TCTCACTCCC TCATTAGCTC TCTAAGATCT 
CGAATTCAGC TCACATTTCT TCGTTTTGTA TGAACATTTT CAGTTGCTGA 
AGGTTATTGG TTGAAGCAGG CATCGATGTC ACCATATGCA GGATCTATGT 
ATCATGGCTC ACCATTGCTG CTCTCGGTTC TTGGACCTCT CACAGTTCAA 
AGGATTAAAG GGCAACCAAG TCACCTCTTG TGCAGCTTGG TTTTTGTTAT 
TGCAGATATA TTAAGTGCAA TGCTTCTTCG AGCTATTGGT CAGAAACTCC 
AGATGGCTTA TGGACTGAAT GCGAGACTAC TTGGTTTTCT TAAGTCATCA 
AGGGATAAAG TGATCCTACC TTGTGGCGAT ATNGCTGCTC TTGTGTATNN 
GTGGAATCCT TTCACGATA

Gene models with high sequence identity

AT1G63110.3 [+] show detail - GPI transamidase subunit PIG-U
E-value: 0; Score: 99.35

3 prime EST [+] show sequence

GCGGATCAAA ACAAGAACTT TAAAACCTCT CGGTAAAAAG TACAAATTAA 
TGGTTACTCT AAACGGAAAG GCACAGGAGA TTTGTTATTT ATATGATGTT 
CTCAAACAAA GAAAAGCTAC TCACACAAAT CACATGTTGC CAACTTTAAG 
CTAAAGACCC AACTCTTTTC TTTACGTGTA ACAGAAAAGT GGCGCAATGA 
CCTTCAATGG CTTAGCTCTT GACTTCTCGA TGGTTTGAGT TTGATCTCTT 
CAGCGCCCTG TCATGGTTTA GCATTGCGCT TACGCTCTCA ACCACGAAAA 
CGATCTGAAA GCACGCGTAG CCGATAGCGT TTCCAAAGTA GAAATTTGCA 
TTTCCGGTTC CCCGCCATAT CCAGAGATTG TGCATCACAG GGCTGAGGAG 
AGAGATCCCG AGATATCCAC AGAAGAGGAA GAACGAGAAC TTCATATCTA 
ATAACTCATT GACAAACAAT GCCCATAAGC TCAAGTATAA CGCCGAATCT 
CCGACTGAAG GATAAGATTT AAGAATCGAG GAGATCGCTA AGTATATGAA 
AGCCAGGAAA CATGGCCGAT GTTTCAACCT TATGGCTAAG GGCAGTAACA 
TGAACAGAAT ATTTACGTGT AAAACTATCA GAAAAAAGTT TCTGAAGAAG 
TCGAATACTT CTGCAAAGAA GTACCAAAA

Gene models with high sequence identity

AT1G63110.3 [+] show detail - GPI transamidase subunit PIG-U
E-value: 0; Score: 100.00

AT1G63110.3

Model type: Protein coding
Short Description: GPI transamidase subunit PIG-U
Computational Description: GPI transamidase subunit PIG-U; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G12730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR