F26333

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26333

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F26333

Determination of introduced cDNA(s)

  • RAFL04-15-C24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-C24 - Resource: pdz87383

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL04-15-C24 - 5 prime EST
    GGTCTCTCTT CACTCGCCGG AGAGAGAGAA GAAGAAAAGA CGACGGAGAA 
    ATGGCGGAGG AGCAGAAAAT GAAGCAGCTA AGCCGATTCT GGATTTGGGC
    TTTATCTTCC ATTGCTTTCC GATTGATCTT GATCTCCTTC CCGGGAAATC
    TCAATCTCTC TTCCCGTCCG GAGGTCTCTA CCCCTCTCAC CAGCATTCGC
    CGCCGTATCT CCTCTCTCTT TCTCACTCCC TCATTAGCTC TCTAAGATCT
    CGAATTCAGC TCACATTTCT TCGTTTTGTA TGAACATTTT CAGTTGCTGA
    AGGTTATTGG TTGAAGCAGG CATCGATGTC ACCATATGCA GGATCTATGT
    ATCATGGCTC ACCATTGCTG CTCTCGGTTC TTGGACCTCT CACAGTTCAA
    AGGATTAAAG GGCAACCAAG TCACCTCTTG TGCAGCTTGG TTTTTGTTAT
    TGCAGATATA TTAAGTGCAA TGCTTCTTCG AGCTATTGGT CAGAAACTCC
    AGATGGCTTA TGGACTGAAT GCGAGACTAC TTGGTTTTCT TAAGTCATCA
    AGGGATAAAG TGATCCTACC TTGTGGCGAT ATNGCTGCTC TTGTGTATNN
    GTGGAATCCT TTCACGATA

    Gene models with high sequence identity

    1. AT1G63110.3 [+] show detail - GPI transamidase subunit PIG-U
      E-value: 0; Score: 99.35

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL04-15-C24 - 3 prime EST
    GCGGATCAAA ACAAGAACTT TAAAACCTCT CGGTAAAAAG TACAAATTAA 
    TGGTTACTCT AAACGGAAAG GCACAGGAGA TTTGTTATTT ATATGATGTT
    CTCAAACAAA GAAAAGCTAC TCACACAAAT CACATGTTGC CAACTTTAAG
    CTAAAGACCC AACTCTTTTC TTTACGTGTA ACAGAAAAGT GGCGCAATGA
    CCTTCAATGG CTTAGCTCTT GACTTCTCGA TGGTTTGAGT TTGATCTCTT
    CAGCGCCCTG TCATGGTTTA GCATTGCGCT TACGCTCTCA ACCACGAAAA
    CGATCTGAAA GCACGCGTAG CCGATAGCGT TTCCAAAGTA GAAATTTGCA
    TTTCCGGTTC CCCGCCATAT CCAGAGATTG TGCATCACAG GGCTGAGGAG
    AGAGATCCCG AGATATCCAC AGAAGAGGAA GAACGAGAAC TTCATATCTA
    ATAACTCATT GACAAACAAT GCCCATAAGC TCAAGTATAA CGCCGAATCT
    CCGACTGAAG GATAAGATTT AAGAATCGAG GAGATCGCTA AGTATATGAA
    AGCCAGGAAA CATGGCCGAT GTTTCAACCT TATGGCTAAG GGCAGTAACA
    TGAACAGAAT ATTTACGTGT AAAACTATCA GAAAAAAGTT TCTGAAGAAG
    TCGAATACTT CTGCAAAGAA GTACCAAAA

    Gene models with high sequence identity

    1. AT1G63110.3 [+] show detail - GPI transamidase subunit PIG-U
      E-value: 0; Score: 100.00

    AT1G63110.3

    Model type
    Protein coding
    Short Description
    GPI transamidase subunit PIG-U
    Computational Description
    GPI transamidase subunit PIG-U; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G12730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR