F26341

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26341

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26341

Determination of introduced cDNA(s)

  • RAFL06-72-J19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-72-J19 - Resource: pda03396

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-72-J19 - full reading 
    ACATCTCTCT CTATTTCTCT TCCACAAAGA GTCCTAACTT CGAGTTGAAA 
    CAAACACCAT TTCTCATCTC TATCTCAGAA AGAACAAACC ATTTCGTGTT 
    CTTTCTTTCT CTATTCTCAT AAGGAAATAT AATTCCTGAA ACTGTTGAGT 
    TCTTGTGAAA GGAAATAAAA AACATGATGA TGGGCAAAGA AGATCTAGGT 
    TTGAGCCTAA GCTTAGGGTT TTCACAAAAT CACAATCCTC TTCAGATGAA 
    TCTGAATCCT AACTCTTCAT TATCAAACAA TCTCCAGAGA CTCCCATGGA 
    ACCAAACATT CGATCCTACA TCAGATCTTC GCAAGATAGA CGTGAACAGT 
    TTTCCATCAA CGGTTAACTG CGAGGAAGAC ACAGGAGTTT CGTCACCAAA 
    CAGTACGATC TCAAGCACCA TTAGCGGGAA GAGAAGTGAG AGAGAAGGAA 
    TCTCCGGAAC CGGCGTTGGC TCCGGCGACG ATCACGACGA GATCACTCCG 
    GATCGAGGGT ACTCACGTGG AACCTCAGAT GAAGAAGAAG ACGGGGGCGA 
    AACGTCGAGG AAGAAGCTCA GGTTATCAAA AGATCAGTCT GCTTTTCTCG 
    AAGAGACTTT CAAAGAACAC AACACTCTCA ATCCCAAACA GAAGCTAGCT 
    TTGGCTAAGA AGCTGAACTT GACGGCAAGA CAAGTGGAAG TGTGGTTCCA 
    AAACAGAAGA GCTAGAACCA AGTTAAAGCA AACGGAGGTA GATTGCGAAT 
    ACTTGAAACG GTGCGTAGAG AAGCTAACGG AAGAGAACCG GAGACTTCAG 
    AAAGAGGCTA TGGAGCTTCG AACTCTCAAG CTGTCTCCAC AATTCTACGG 
    TCAGATGACT CCACCAACTA CACTCATCAT GTGTCCTTCG TGCGAGCGTG 
    TGGGTGGCCC ATCATCATCG AACCATCACC ACAATCACAG GCCCGTTTCT 
    ATCAATCCGT GGGTTGCTTG TGCTGGTCAG GTGGCTCATG GGCTGAATTT 
    TGAAGCCTTG CGTCCACGAT CGTGATTTTT TATTTTAGTG GTGGGAAAAG 
    GGTGTTTTGG TATTTTTCGT TATCGTTATA TAGTCTATCT GTGTGGGGTC 
    ATTGTAATTT TGGATGATTG GCCTTCTCAT GAACTAGTCC TATGTATGAT 
    GCAACCTTAA AAAGATTTAA ATTAGCAAAA ATTAGTTACA AACTT

    Gene models with high sequence identity

    1. AT5G47370.1 [+] show detail - Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 9.7e-19
    Coil coiled-coil 0
    HMMSmart Homeobox 6.9e-16
    HMMSmart Leucine zipper, homeobox-associated 1.1e-23
    ProfileScan Homeobox 17.313
    Gene3D Homeodomain-related 2.2e-16
    HMMPanther HOMEOBOX PROTEIN 5.1e-13
    PatternScan Homeobox, conserved site 0
    HMMPfam HD-ZIP protein, N-terminal 1.6e-24
    HMMPfam Homeobox 8.8e-16
    HMMPfam Leucine zipper, homeobox-associated 2e-14

    See the detailed result >

    AT5G47370.1

    Model type
    Protein coding
    Short Description
    Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
    Curator Summary
    homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis.
    Computational Description
    HAT2; FUNCTIONS IN: transcription repressor activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, auxin mediated signaling pathway, shade avoidance, regulation of transcription, DNA-dependent, unidimensional cell growth; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HD-ZIP protein, N-terminal (InterPro:IPR006712), Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (TAIR:AT4G17460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR