F26404

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26404

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: F26404

Determination of introduced cDNA(s)

  • RAFL05-10-C05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-10-C05 - Resource: pda00906

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-10-C05 - full reading 
    AGGAGAAGAA CATGGTCTCC AACTCCGAAG GACAAAACCG AGAGACGCGG 
    CGAGAAAGAC GGTGACTTGA CGTGGTCTAT GGGTGGTGGT GGGAATCTCG 
    TCGACGGTGT TCGTCGATGG CTTTTTCAGC GACCTTCTTC TTCTTCTTCT 
    TCTTCTTCTT CCAACAATAA TAATAATAAT CACGAACAAC CCATTTTCAA 
    TTCTTCTTCT TTCTCTTCTT CCTCTAACCC CAATCATTCC GCTAACTCTG 
    GAGAGCTTAT TATTGAAGAA GATCTCGATT TCTCTGGTCT AACGCTTATT 
    AACGTTCCTA AACGTAATCA TTTACCTATG GATCCTCACA AGAAGGGTGA 
    AACTGAATTC TTCACGGAGT ATGGAGAAGC TAACAGGTAT CAGATTCAAG 
    AGGTTGTTGG CAAAGGAAGT TATGGTGTTG TGGCTTCTGC TGTTGACTCA 
    CACACTGGAG AGAGAGTTGC GATCAAGAAG ATCAACGATG TGTTTGAGCA 
    TGTCTCCGAT GCTACTAGGA TTCTCAGAGA GATCAAATTG CTTCGGTTGC 
    TTCGTCATCC TGATGTTGTG GAGATTAAAC ACATCATGTT ACCTCCTTCT 
    CGCAGAGAAT TCCGCGATAT TTATGTTGTC TTTGAGTTGA TGGAATCTGA 
    TCTTCATCAA GTGATCAAGG CGAATGATGA TTTGACTCCT GAGCATTATC 
    AGTTTTTCTT GTACCAGCTT CTTCGTGGTC TGAAATATGT TCACGCAGCT 
    AATGTGTTTC ATCGGGATTT GAAACCGAAG AACATTCTAG CTAATGCTGA 
    TTGCAAATTG AAGATCTGTG ATTTTGGGCT GGCTCGCGTT TCTTTTAACG 
    ATGCCCCAAC CGCTATATTT TGGACTGATT ATGTAGCTAC TCGGTGGTAT 
    CGTGCCCCTG AACTCTGTGG ATCGTTTTTC TCCAAATATA CCCCTGCGAT 
    TGATATCTGG AGTGTCGGTT GCATTTTTGC GGAAATGCTT TTGGGTAAGC 
    CTTTGTTTCC CGGGAAAAAC GTTGTGCACC AATTGGATCT AATGACTGAC 
    TTTCTTGGTA CTCCACCTCC TGAGTCAATA TCAAGGATTA GAAATGAAAA 
    GGCGAGGAGA TATCTTAGCA GCATGAGGAA AAAACAACCA GTCCCTTTCT 
    CTCATAAATT CCCTAAAGCT GATCCTTTGG CTCTCCGCCT TCTGGAACGC 
    CTGCTTGCCT TTGATCCGAA AGATCGTGCA TCAGCTGAAG ATGCACTAGC 
    TGATCCATAT TTCAGTGGTT TGTCAAATTC AGAGCGTGAA CCAACAACAC 
    AGCCAATTTC AAAGCTTGAA TTTGACTTTG AGAGAAAGAA GTTAGTTAAA 
    GATGATGTCA GAGAATTAAT TTACCGAGAG ATATTGGAAT ATCATCCTCA 
    GATGTTGGAG GAATACCTTC GTGGTGGTGA TCAGCTTAGC TTTATGTACC 
    CAAGTGGGGT AGACCGATTT AAAAGGCAAT TTGCTCATCT TGAAGAAAAT 
    CAAGGTAAAC CAGGAGCAGC AGGAGGAGGA AGAAGTACTG CACTTCACAG 
    ACATCATGCT TCCTTGCCAA GAGAGAGAGT TCCTGCTCCA AATGGTGAAA 
    CTGCAGAAGA AAGCAGTGAT GTTGAGAGAA GAGCAGCAGC TGCTGTGGCT 
    TCAACCTTGG AATCCGAGGA AGCAGACAAT GGAGGAGGTT ACAGTGCTCG 
    TAACCTCATG AAGAGTGCAA GCATCAGCGG TTCTAAATGC ATTGGTGTCC 
    AATCTAAAAC TGACAAAGAG GATACCATAG CTGAGGAAGA AGATAATGAA 
    ACAGTTGCAG AGCTTACTGA TAAAGTTGCT TCTCTTCACA ATTCTTAAAA 
    ATGATTTAGT TATTTTTTTT CTTTTCTTTT CTTTTTTCAC GAAAGTTTTC 
    TGGTGAAAAG AAATTGGTTT CTCCATTCAT CCACATCTAT CTTCGTGGTT 
    GGGTTTGATT TGTTGTATTT AATAGTTTTG GGGGTTTGAT GAAACTTTAA 
    ATAAAAACAT CGATCTCCAT GTAATTTTTT TGTTTCTCTC TTTTCTTTAA 
    ACACTCATAT TTTGAAATTA TTTATATACT ATTCAGTATT CACTTTGCTA 
    CAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT1G18150.1 [+] show detail - Protein kinase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein kinase, ATP binding site 0
    PatternScan MAP kinase, conserved site 0
    ProfileScan Protein kinase, catalytic domain 44.824
    HMMPfam Serine/threonine-protein kinase-like domain 7.2e-66
    superfamily Protein kinase-like domain 8.7e-85
    Gene3D no description 8e-06
    Gene3D no description 5.1e-64
    HMMSmart Serine/threonine-protein kinase domain 2.4e-92
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.4e-13
    HMMPanther MITOGEN-ACTIVATED PROTEIN KINASE 7 (ERK5)-REL 1.1e-227
    HMMPanther CDC2, MAP KINASE-RELATED 1.1e-227

    See the detailed result >

    AT1G18150.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Curator Summary
    ATMPK8,
    Computational Description
    ATMPK8; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MAP kinase 15 (TAIR:AT1G73670.1); Has 120729 Blast hits to 119418 proteins in 3824 species: Archae - 100; Bacteria - 13765; Metazoa - 44723; Fungi - 12383; Plants - 29341; Viruses - 570; Other Eukaryotes - 19847 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR