F26430

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26430

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26430

Determination of introduced cDNA(s)

  • RAFL06-16-E14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-16-E14 - Resource: pda07580

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-16-E14 - full reading 
    AGACAGGAGA TATGAACTGC GGAGGAAAGG TGGTCTGCGT TACCGGAGCT 
    TCCGGCTACA TAGCGTCTTG GATTGTCAAG CTTTTGCTCC TCCGTGGCTA 
    CACCGTCAAT GCCACTGTTC GAGATCCAAA GGACAAGAAG AAAACAGAAC 
    ATCTTCTTGC ACTAGACGGT GCAAAAGAAA GACTCAAATT GTTCAAAGCA 
    GATCTTTTGG AAGAATCTTC TTTTGATCAA GCTATCGATG GTTGTGATGC 
    TGTCTTCCAC ACTGCTTCTC CAGTTCTATT CACTGTCACA GATCCTCAGA 
    CTGAGCTGAT TGATCCAGCC TTAAAGGGTA CTATTAACGT CCTTAATACA 
    TGCAAACAAG TTTCTTCTGT CAAGAGGGTC ATTCTGACAT CTTCCACGGC 
    TGCGGTTCTC TCTCGTCAGC CTCCTATTGG GCCAAACGAC CTGGTGGACG 
    AGACTTTCTT CTCCGATCCA AGTCTATGCA GGGAGACAAA GAATTGGTAT 
    TCACTCTCCA AGATTTTGGC CGAGAATGCA GCGTGGCAAT TTGCCAAAGA 
    CAATGGAATC GACATGGTTG TGTTGAATCC TGGATTTATT TGCGGACCAC 
    TCTTGCAACC AACTCTTAAC ATGTCGGTAG AGCTAATTGT GGATTTCATA 
    AATGGTAAGA ACCCTTTCAA TAAAAGATAC TACAGGTTCT CGGACGTAAG 
    AGATGTCGCC TTGGTTCATA TCAAAGCGTT GGAGACTCCT TCAGCCAATG 
    GCAGATACAT CATCGATGGT CCAAATATGA GTGTAAACGA CATTATAGAC 
    ATTCTTCGGA AGCTGTTCCC AGATTTGTCT ATTGCTGATA CGAATGAAGA 
    AAGTGAGATG AATGAGATGA TATGCCAAGT GTGTGTGGAG AAAGTGAAAA 
    ATTTGGGAGT AGAGTTCACT CCTATGAAAT CAAGCCTTAG AGACACTATT 
    GTTAGCCTCA AGGAGAAATG TCTTTTATGA TTCTGTTCGT ATATTTGTAA 
    CTATTATGTG TATTTTTATT TTGTTAGTAT TACTAATTCA AGTGGTTTAA 
    GCT

    Gene models with high sequence identity

    1. AT1G09490.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 3.5e-58
    Gene3D NAD(P)-binding domain 2.7e-36
    HMMPanther CINNAMOYL-COA REDUCTASE 8.8e-166
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 8.8e-166
    HMMPfam NAD-dependent epimerase/dehydratase 2e-25

    See the detailed result >

    AT1G09490.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Curator Summary
    similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase; Location of EST gb:H37170, gb:H77227 and gb:AA605565
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09480.1); Has 10413 Blast hits to 10399 proteins in 1719 species: Archae - 172; Bacteria - 4069; Metazoa - 410; Fungi - 939; Plants - 2479; Viruses - 15; Other Eukaryotes - 2329 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR