F26443

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26443

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Original: F26443

Determination of introduced cDNA(s)

  • RAFL09-69-J08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-69-J08 - Resource: pda17810

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-69-J08 - full reading
    CCCCGACGAC TACAAGCGAA CATAATGTTT AAGAAGGCGG TGGAGGCTAA 
    GTCTCACCAG CGTCTCTCCG GCGCTGACCG GAAAAAACTC CGTCGCACCG
    TCCGAAATAG GCTTCCCCTT CTTACCGATG AACTCCTCGA CGCAATTCTT
    CCTCCCAAGG TCGAGATTAC ACTTTCCAAG TTTCAGAATC GAGTTATTGT
    TTATAGTATT GAAGGTGGAT GTCCCATGTT TTTCGATATC GATGGAAGAG
    GAACTGAGAT TTTCCCCACA GTTTTTGCTC TGTGGGAGGC TCCTGAAATG
    TTACCTTCCT TTATGTTGAA AGGAGGTGAG GTTTCACGTT ATATTATAGG
    CGGTGCAGAT TTGATGTTCC CAGGTATTTT GATCCCTCCC CAAGGCTATC
    CTTCTTTCTC TGCTGGAGAA ATATGGGCTG TCAAAGTTCC TGGGAATCTA
    GCACCTATTG CGGTTGGGTG TACCACAATG AGTAGTGAAG AAGCTCGTAA
    AGCAGGTTTA CGTGGGAAGG CTTTAAGGAT AACTCATTAT TACCGTGACT
    TCCTATGGGA ATCAGCTGAG GGGCATTATG TTCCAAATGC GGGGTTTATG
    GAGGATGTGG TCATGGAGGA CCCATCGTAC CTTGCTCCTG GTTCAGGTGA
    AGATATTTTA GACACTTCTG CAAGCACCGG AAATGAAGAA GATGAATCTG
    CTCTGGAAAC AGCTTCAACA TCGGCTGCGG ATGCTAAGAA TGATGCTGAA
    GTACATGTCG TTGGGAGCAT GAATGAGCTA TACTTGGTAG ATGATGTATG
    TGCTACTGAA ACTAATACCG ACAAGCAGAT TACTCTCTCC CCTGAGGAGG
    TAGATACCCT TCTTGACCAA TGTCTTTTGC AAGCATTGCA TACAACACTA
    AAGGAGAAAG ACCTTCCCAT CCCAGGAAGC ACTCTATGGG CAAATCATGT
    ATTACCTTGT AGGCCTTCTG GTCTCACACT TGACATTAAG AAGTCTTCCC
    ATAAAAAGTT GTCAAAGTGG CTGCAATCTA AAGCGTCTGG TGGAATGATA
    TCTGTTAAGG AAGACAAGCA TAAGAAGGAG ATAGTATTGA TTTCAGTCAA
    CCGCAGCCAC CCAGATTACA AATCCTTCAA GCCAGAGAAA AAGAAAGCGG
    AAGTCTCCGA GTCTCCTGGA GAGCGCTCCA CGGCGCAAGC TCAGTCAGAG
    AAAGGGCTTG AAATTATAGA GGTCTATAAA TCAAGCATAC ACAATAGTGC
    AATATTTGCA TCAGTTGGGG AAGACAAAGG AAATCTGTAC ACAGCTTCTG
    AAGCCACTGA CGTTGTGTTC AAATACATTG AGAAGGAAAA TCTAGTAAAG
    CCAACAAACA AATCAATGGT GGTGTTGGAT CCGATACTAT GTGATGCATT
    GTTCAAAGGA GCTATCAAAA AGGGATCGGC ATATCCGTCA GAGATCCACA
    AAAAGGATGT TGGGTCGACA TTTGTAGGTA GAATGCAGCC TAATCACGTA
    GTGATGAGAG GAGGCGGTGA ACCCGTGGTT CGTAAAGGAG CTGTAAAGCC
    GGTTCAGATA ATGACAGAAC GAAGACAAGG TAACAAAAAA GTGACCAAGG
    TCACAGGGAT GGAGACGTTC TTGATAGACC CAGACTCGTT TGGATCAGAA
    CTGCAGAAGA AGTTTGCTTG CAGTACTTCA GTTGGAGAAC TTCCAGGTAA
    GAAAGGGTAC GAGGTTCTGA TTCAAGGAGG TGTGATTGAT AACCTTGCGA
    GATATATGGT GGAACACTAT GGAGTTCCAA AGAGATACAT CGAAGTTCTT
    GATAAGACTA GAAAGTGAAT GGTTTTTTCT ATTTCATTTT TTTTTTTGTG
    TGTTTTAATC TTCTAATTTT ATTTGATACG TACACTCTGT GACTCTAGAG
    ATGTGGAACA AATGAGAATA AAATTGTTTT GCTAAAAAAA AAA

    Gene models with high sequence identity

    1. AT1G71350.1 [+] show detail - eukaryotic translation initiation factor SUI1 family protein
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Translation initiation factor SUI1 4e-17
    HMMPfam Pseudouridine synthase/archaeosine transglycosylase 0.000011
    HMMPfam SWIB/MDM2 domain 0.00021
    HMMPanther LIGATIN 6.7e-235
    HMMPanther LIGATIN 6.7e-235
    Gene3D no description 0.0000011
    HMMTigr Uncharacterised domain 2 0.000000021
    superfamily Translation initiation factor SUI1 2e-28
    superfamily SWIB/MDM2 domain 5e-18
    superfamily Pseudouridine synthase/archaeosine transglycosylase-like 0.00000000000046
    ProfileScan Translation initiation factor SUI1 18.606
    ProfileScan Pseudouridine synthase/archaeosine transglycosylase 13.927

    See the detailed result >

    AT1G71350.1

    Model type
    Protein coding
    Short Description
    eukaryotic translation initiation factor SUI1 family protein
    Computational Description
    eukaryotic translation initiation factor SUI1 family protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Translation initiation factor SUI1 (InterPro:IPR001950), SWIB/MDM2 domain (InterPro:IPR003121), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (TAIR:AT1G09150.1); Has 1013 Blast hits to 993 proteins in 255 species: Archae - 62; Bacteria - 0; Metazoa - 354; Fungi - 333; Plants - 100; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR