F26502

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26502

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Other)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Other)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26502

Determination of introduced cDNA(s)

  • RAFL19-61-E05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-61-E05 - Resource: pda20191

    full reading [+] show sequence

    Nucleotide sequence: RAFL19-61-E05 - full reading
    ACTCTCACCA GTCACAACCA AAAAAAAGAA AACACAAAAA CAAAGATTAT 
    AATGGCTTCC TCAACCATGG CTTTGTCCTC CCCTGCCTTC GCCGGAAAGG
    CTGTGAAGCC TGCCGCATCA GATGTCCTCG GAAGCGGCCG TGTGACCATG
    AGGAAGACTG TCGCCAAGCC AAAGGGTCCA TCAGGCAGCC CATGGTACGG
    ATCTGACCGA GTCAAGTACT TGGGTCCATT CTCCGGCGAG CCCCCGAGCT
    ACCTTACCGG TGAGTTCCCC GGTGACTACG GATGGGACAC CGCTGGTCTA
    TCCGCCGACC CAGAGACCTT CGCCAGGAAC CGTGAGCTAG AAGTTATCCA
    CAGCAGATGG GCCATGCTCG GAGCCCTAGG CTGCGTTTTC CCTGAGCTAT
    TGGCTAGGAA CGGAGTGAAG TTCGGAGAAG CGGTTTGGTT CAAGGCCGGT
    TCACAGATCT TCAGCGACGG AGGATTGGAC TACTTGGGCA ACCCGAGCTT
    GGTCCACGCT CAGAGCATCT TAGCCATTTG GGCTACTCAA GTTATCCTCA
    TGGGAGCTGT TGAAGGCTAC AGAGTCGCCG GAGATGGTCC ATTGGGAGAA
    GCAGAGGACT TGCTTTACCC AGGTGGCAGC TTCGACCCAT TGGGCCTCGC
    TACTGACCCC GAGGCTTTCG CAGAGTTGAA GGTGAAGGAG CTCAAGAACG
    GAAGGTTGGC TATGTTCTCT ATGTTTGGAT TCTTCGTTCA AGCCATCGTC
    ACCGGAAAGG GACCTTTGGA GAACCTCGCC GACCATTTGG CCGACCCAGT
    CAACAACAAC GCTTGGGCCT TCGCCACCAA CTTCGTCCCC GGAAAGTGAG
    CGGCTGCTTA TTATGTGAAT GAGAGCAGAG AAAGAGAGTT TGTTTGTGGT
    CTATTCTATG TAAATTTGTG AACTTTCCTT TGTGGTATCT TTGTATAGAA
    ATCGAACCTC TTTTTCTCTA ACTGTGTTGG CGTTTTATCT GAAGACTCAA
    TTGAATTGAA ATATCCACTC TTGTAAAATT CATATGTTCT GAAAAAAAAA
    A

    Gene models with high sequence identity

    1. AT2G34420.1 [+] show detail - photosystem II light harvesting complex gene B1B2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Chloroa_b-bind 9e-50
    superfamily Chlorophyll a-b binding protein 9.6e-81
    HMMPanther Chlorophyll A-B binding protein 2.4e-199

    See the detailed result >

    AT2G34420.1

    Model type
    Protein coding
    Short Description
    photosystem II light harvesting complex gene B1B2
    Curator Summary
    Photosystem II type I chlorophyll a/b-binding protein
    Computational Description
    photosystem II light harvesting complex gene B1B2 (LHB1B2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, guard cell, juvenile leaf, cultured cell, leaf; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2425 Blast hits to 2343 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2093; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR