F26504

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26504

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F26504

Determination of introduced cDNA(s)

  • RAFL09-94-E22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-94-E22 - Resource: pda17913

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-94-E22 - full reading 
    GAACGGAACA ATCAAATCAA TCATACAGAA GCAGCTAATG GCGTTGAGAA 
    TCAGGAAGGC GACGACGACA CTTCTCTTCT CCGGTGGGAT TACTCATGGA 
    ACGGATCGGA TCGCGAGAAC CGGAGCATTG CTCAGCCGTT GGATCTCCTC 
    TGCTTCGTCA TCTTCCGCTG TTGTAGCGGA TGATGAATCT AGTGGGATTT 
    ACGGATTGGG AAGTGTGTTG AAAGAGTATG AAGATTATAG GAGATCTCTC 
    TATGGTGAGA TCACTCATAA GGCTTTGCTT GTTGATGCTG TTGGTACTCT 
    CCTTGTTCCC GCTCAACCTA CTGCTCAGAT ATATAAGAAT ATTGGAGAGA 
    AGTACGGAGT GGAGTACTCG GAGGCTGAGA TACTTACTAG ATACAGAAGA 
    GCTTATCAGA AACCATGGGG TGGATCTCAT CTTAGATATG TAAACGATGC 
    AAGACCTTTC TGGCAGTATA TAGTGACTGC ATCAACAGGC TGCTCGGATT 
    CACAGTACTT TGAAGAGCTT TACAGCTATT TTACTACAGA ACAGGCGTGG 
    AAGTTATGTG ATCCAGATGC AGGGAAAGTG TTTAAGGCTA TTAAAGAAGC 
    GGGTGTAAAA GTTGCAATAG TCTCCAACTT CGATACTCGG TTAAGACCTC 
    TCCTACGTGC ATTGAGATGT GAAGATTGGT TTGATGCTGT AGCTGTTTCA 
    GCAGAAGTTG AAGCGGAAAA ACCAAACCCG ACTATCTTCT TAAAAGCTTG 
    TGAGTTATTA GAAGTGAATC CCGAGGATGC GGTTCATGTA GGAGATGACC 
    GTAGGAATGA TGTATGGGGA GCTAGAGACG CAGGCTGTGA CGCTTGGCTC 
    TGGGGAAGTG AAGTTACGTC ATTTAAACAG GTTGCTCAAC GGATAGGAGT 
    GAAGGTCTGA AGCAAAAGCA TATGAGAGAA ATGGTTCAGA GACATGTTCA 
    GACTTCAGTT TTAGCTTCTT CTTTTTTTGT GTGAGCAGTT TTGTATATTC 
    CATTTCTCTT TTGTAGCATA ATGTGTGTAA TATATGTTGC GGCTAATGTA 
    GAAAACCAGA AAACAATGTA TAATAAAAGA TCAATAATAA GC

    Gene models with high sequence identity

    1. AT2G41250.1 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.2e-21
    superfamily HAD-like 3.2e-34
    HMMTigr HAD-superfamily hydrolase, subfamily IA, REG-2-like 1.9e-98
    HMMTigr HAD-superfamily hydrolase, subfamily IA, variant 1 5.2e-05
    HMMPfam Haloacid dehalogenase-like hydrolase 5.6e-22
    HMMPanther HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN C 1.9e-61
    HMMPanther HALOACID DEHALOGENASE-LIKE HYDROLASE 1.9e-61
    FPrintScan Haloacid dehydrogenase/epoxide hydrolase 5.3e-08
    FPrintScan Haloacid dehydrogenase/epoxide hydrolase 5.3e-08
    FPrintScan Haloacid dehydrogenase/epoxide hydrolase 5.3e-08
    FPrintScan Haloacid dehydrogenase/epoxide hydrolase 5.3e-08

    See the detailed result >

    AT2G41250.1

    Model type
    Protein coding
    Short Description
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    Computational Description
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), HAD-superfamily hydrolase, subfamily IA, REG-2-like (InterPro:IPR011949), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G14310.1); Has 5345 Blast hits to 5345 proteins in 1611 species: Archae - 258; Bacteria - 4323; Metazoa - 249; Fungi - 67; Plants - 142; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR