F26509

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26509

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26509

Determination of introduced cDNA(s)

  • RAFL04-20-H24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-20-H24 - Resource: pda07216

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-20-H24 - full reading 
    AAAAAAAAAA ATACAAATCG TTCACCGGAA AAAAACAAAA TGGCTCGTCG 
    CGATGTTCTC CTCCCTTTCC TCCTCCTTCT CGCCACCGTC TCCGCCGTAG 
    CTTTCGCCGA AGATGATCCA GACTGTGTAT ACACATTCTA CCTCAGAACC 
    GGATCGATCT GGAAAGCCGG AACCGATTCG ATCATCAGCG CAAGAATCTA 
    CGATAAGGAC GGTGACTACA TCGGAATCAA AAACCTTCAA GCTTGGGCTG 
    GATTAATGGG ACCTGATTAC AATTACTTCG AGAGGGGTAA TCTCGACATT 
    TTCAGTGGAA GAGCACCGTG TTTACCTAGT CCGATCTGTG CCTTAAACCT 
    AACCTCCGAT GGCTCCGGCG ATCACCATGG TTGGTACGTT AATTACGTTG 
    AGATCACGAC GGCTGGTGTT CACGCACAGT GCTCGACGCA GGATTTTGAG 
    ATTGAGCAAT GGCTCGCTAC TGATACTTCT CCTTATGAGC TCACCGCCGT 
    ACGGAACAAT TGTCCGGTCA AGCTTAGGGA TAGTGTTAGT CGGGTCGGGT 
    CTGAGATTCG GAAAAAGCTT TCTTGGGTCG TTTAAGTGAT GTGTTGTGAT 
    TCGTGAGACT TGTCTGTATT GTTTGTATTC TCGTTGTTCT TGTGAGTGTA 
    ATGTGGCGTT AATGAAATAT GATTCAATAA AATAAAACCT TTTTAGC

    Gene models with high sequence identity

    1. AT4G39730.1 [+] show detail - Lipase/lipooxygenase, PLAT/LH2 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Lipoxygenase, LH2 23.322
    HMMPfam Lipoxygenase, LH2 7.2e-23
    Gene3D Lipoxygenase, LH2 2.6e-07
    superfamily Lipase/lipooxygenase, PLAT/LH2 2.2e-25

    See the detailed result >

    AT4G39730.1

    Model type
    Protein coding
    Short Description
    Lipase/lipooxygenase, PLAT/LH2 family protein
    Computational Description
    Lipase/lipooxygenase, PLAT/LH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); BEST Arabidopsis thaliana protein match is: Lipase/lipooxygenase, PLAT/LH2 family protein (TAIR:AT2G22170.1); Has 247 Blast hits to 225 proteins in 46 species: Archae - 0; Bacteria - 3; Metazoa - 94; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR