F26519

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26519

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26519

Determination of introduced cDNA(s)

  • RAFL09-84-C16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-84-C16 - Resource: pda09963

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-84-C16 - full reading
    ATTCTCTTTC TCTCTATCTA TCATCATCAT CCTCGTAATC CTCTCCTTTC 
    TCCTTCAGAC CCCTCCTAGT TGCTGTTTAA ACAAACAAAA AAAGACTGCT
    TCTCTTTCTT ATTTCTCTCA TCATCATCAT CAATGGTTTT ATGAGATTTA
    TATCAAAAAA CATTGAGGAG CTAGAGAGAA AGAGAGAGTG TGTGTGTAGA
    AAAAGATTGA AACATCATCA AGATTGATGG AGCAAGGAGG AGGTGGTGGT
    GGTAATGAAG TTGTGGAGGA AGCTTCACCT ATTAGTTCAA GACCTCCTGC
    TAACAACTTA GAAGAGCTTA TGAGATTCTC AGCCGCCGCG GATGACGGTG
    GATTAGGAGG TGGAGGTGGA GGAGGAGGAG GAGGAAGTGC TTCTTCTTCA
    TCGGGAAATC GATGGCCGAG AGAAGAAACT TTAGCTCTTC TTCGGATCCG
    ATCCGATATG GATTCTACTT TTCGTGATGC TACTCTCAAA GCTCCTCTTT
    GGGAACATGT TTCCAGGAAG CTATTGGAGT TAGGTTACAA ACGAAGTTCA
    AAGAAATGCA AAGAGAAATT CGAAAACGTT CAGAAATATT ACAAACGTAC
    TAAAGAAACT CGCGGTGGTC GTCATGATGG TAAAGCTTAC AAGTTCTTCT
    CTCAGCTTGA AGCTCTCAAC ACTACTCCTC CTTCTCATCC TCACGCTCAT
    CAACCAGAAC AGAAACAACA ACAACAACCA CAACAAGAGA TGGTCATGAG
    CTCGGAACAA TCATCATTAC CATCATCATC AAGATGGCCA AAGGCAGAGA
    TTCTAGCGCT TATAAACCTG AGAAGTGGAA TGGAACCAAG GTACCAAGAT
    AATGTACCTA AAGGACTTCT ATGGGAAGAG ATCTCAACTT CAATGAAGAG
    AATGGGATAC AACAGAAACG CTAAGAGATG TAAAGAGAAA TGGGAAAACA
    TAAACAAATA CTACAAGAAA GTTAAAGAAA GCAACAAGAA ACGTCCTCAA
    GATGCTAAGA CTTGTCCTTA CTTTCACCGC CTCGATCTTC TTTACCGCAA
    CAAAGTACTC GGTAGTGGCG GTGGTTCTAG CACTTCTGGT CTACCTCAAG
    ACCAAAAACA GAGTCCGGTC ACTGCGATGA AACCGCCACA AGAAGGACTT
    GTTAATGTTC AACAAACTCA TGGGTCAGCT TCAACTGAGG AAGAAGAGCC
    TATAGAGGAA AGTCCACAAG GAACAGAAAA GAAGACCTTG TGATGAGAGA
    GCTGATTCAA CAACAACAGC AACTACAACA ACAAGAATCA ATGATAGGTG
    AGTATGAAAA GATTGAAGAG TCTCACAATT ATAATAACAT GGAGGAAGAG
    GAAGATCAGG AAATGGATGA GGAAGAACTA GACGAGGATG AGAAGTCCGC
    GGCTTTCGAG ATTGCGTTTC AAAGCCCTGC AAACAGAGGA GGCAATGGCC
    ATACGGAACC ACCTTTCTTG ACAATGGTTC AGTAAAATCA GAATCATTGT
    TTCAAGAAAA TGTACTTATG TGTGCATAGT TTTCTAAACA AAACACCCAA
    AAACACAAAA CACAAACACA CACACACACA CATCTGACAC CACAAACTGA
    AATATCAAGG TCTCATCGAT CTTCGATTTT TCAGTGAATA CAATTCTTTT
    TCACATTCTT TCCCTTTTGT TCTTTTCTTT CTCACTGTCT CTTGTTTGTT
    TCTTCTTGTT CATTGTTTTC TTCTTCCAAC CCCCACATGA ACAAAAAACT
    CTAGCTAAAA GGTCTTTTAG ATT

    Gene models with high sequence identity

    1. AT1G33240.1 [+] show detail - GT-2-like 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan MYB-like 6.934
    ProfileScan MYB-like 6.667
    Coil coiled-coil 0
    HMMSmart SANT, DNA-binding 0.015
    HMMSmart SANT, DNA-binding 0.011

    See the detailed result >

    AT1G33240.1

    Model type
    Protein coding
    Short Description
    GT-2-like 1
    Curator Summary
    Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone. Regulates ploidy-dependent cell growth in trichome.
    Computational Description
    GT-2-like 1 (GTL1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT1G76890.2); Has 6156 Blast hits to 4698 proteins in 415 species: Archae - 8; Bacteria - 243; Metazoa - 2333; Fungi - 696; Plants - 1321; Viruses - 126; Other Eukaryotes - 1429 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR