F26611

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26611

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26611

Determination of introduced cDNA(s)

  • RAFL06-84-B20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-84-B20 - Resource: pda03869

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-84-B20 - full reading 
    ATCTGTTGGG TCGTTTCTTT GAAATCAAAA AAAAAAAATC TCTGTTTCTC 
    TGACACTCTC TCTCTCTGTT TCTACTTTCA AGATTCAAAT TTTTGTTCCC 
    CTGATCCACT CGTCTTTGAA TTCTCATCAA GTCTTATATG TTTCTTGCCT 
    ACTCTGATCT CTATCGGAAA CCCTAGATCC ATATCTTCTT GACTTGACAC 
    TAGTTCACGA ATCACGATCT GCGGTTCCTG AAGCTGGTAA TGCTAGATCC 
    CACCGAGAAA GTAATCGATT CAGAATCAAT GGAAAGCAAA CTCACATCAG 
    TAGATGCGAT CGAAGAACAC AGCAGCAGTA GCAGTAATGA AGCTATCAGC 
    AACGAGAAGA AGAGTTGTGC CATTTGTGGT ACCAGCAAAA CCCCTCTTTG 
    GCGAGGCGGT CCTGCCGGTC CCAAGTCGCT TTGTAACGCA TGCGGGATCA 
    GAAACAGAAA GAAAAGAAGA ACACTGATCT CAAATAGATC AGAAGATAAG 
    AAGAAGAAGA GTCATAACAG AAACCCGAAG TTTGGTGACT CGTTGAAGCA 
    GCGATTAATG GAATTGGGGA GAGAAGTGAT GATGCAGCGA TCAACGGCTG 
    AGAATCAACG GCGGAATAAG CTTGGCGAAG AAGAGCAAGC CGCCGTGTTA 
    CTCATGGCTC TCTCTTATGC TTCTTCCGTT TATGCTTAAC GAATTTTCTG 
    GATCTTAAGT TTTAAGGTGA AATAATAATT AATTTTGTAG GATGTGTAAC 
    GAATTAATGT GTAATTTTTG TATGCGTTTT TTTGGTGTTG TTTGAATTAA 
    CTAAATTTTG AAATTTTTGT ATCTTGTTTA TGTGATCTCT GGTGAAGAAT 
    GAATGAATGA ATGAAAGGTC AAAATGATTT TCTTCCGAAA AAAAAGAAAA 
    AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT3G06740.1 [+] show detail - GATA transcription factor 15
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glucocorticoid receptor-like (DNA-binding dom 1.1e-14
    HMMSmart Zinc finger, GATA-type 5.5e-14
    HMMPfam Zinc finger, GATA-type 2.3e-15
    ProfileScan Zinc finger, GATA-type 12.387
    PatternScan Zinc finger, GATA-type 0
    HMMPanther GATA TRANSCRIPTION FACTOR-RELATED 0.00037
    HMMPanther TRANSCRIPTION FACTOR GATA (GATA BINDING FACTO 0.00037
    Gene3D Zinc finger, NHR/GATA-type 1.1e-05

    See the detailed result >

    AT3G06740.1

    Model type
    Protein coding
    Short Description
    GATA transcription factor 15
    Curator Summary
    Encodes a member of the GATA factor family of zinc finger transcription factors.
    Computational Description
    GATA transcription factor 15 (GATA15); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 16 (TAIR:AT5G49300.1); Has 1479 Blast hits to 1431 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 586; Plants - 738; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR