F26647

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26647

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26647

Determination of introduced cDNA(s)

  • RAFL09-40-G10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-40-G10 - Resource: pda06232

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-40-G10 - full reading 
    CTCAATCTCT CTCAGGTTTC TCTCTCCTCT CTCCAGGAGG TCAAAAAATT 
    CTTTAAAGAG CCGTTTAGAC CAAACCCATT TTTATAATCA TCAATGGACG 
    ATGATGGATT TCGCAATTGG GGATACTATG AACCAGCGGC TGCTTCTTCG 
    TTTAAAGGTA ATCTCGGTTT GCAGCTTATG TCTACTATTG ACCGGAACAC 
    TAAACCGTTT TTACCCGGTC GTGAATCGAA TCTTATGATC GGTTCTAACG 
    GTTCGTATCA CTCTCGAGAG CAAGACATGA ACTATAGCTG GATTAATCAA 
    CCAAAGGACA ACAAGTTCTT CAACATGTTG CCTATAAGTA CACCGAGTTA 
    TAGTAATGTG TTGTCGGAAA CATCTGGTTC GAATTCGATT CAGATGATAC 
    ATCAACCGGT TTTGAATTCA TCCCGGTTTG AGGAGAATCC GATTCCTCCT 
    CCTGCTCCTT GTGAAGAGCA GACTGGTAAG AAGAGAAAGA TGAGAGGCAG 
    CATCGCAACA CCAACGGTAC CGAAAGCTAA GAAGATGCGT AAACCGAAAG 
    AAGAGAGAGA TGTTACTAAC AACAATGTTC AGCAGCAGCA GCAGCGTGTG 
    AAACCGGTTA AGAAGAGTGT TGATCTTGTG ATTAACGGTG TGAGTATGGA 
    CATTTCTGGT TTACCTGTAC CGGTTTGTAC TTGTACTGGA ACTCCTCAAC 
    AATGTTACCG TTGGGGTTGC GGCGGATGGC AATCCGCTTG TTGTACGACT 
    AACATTTCGG TGTATCCATT ACCGATGAGT ACTAAGCGAC GCGGTGCAAG 
    GATTTCGGGT AGGAAGATGA GTCAAGGCGC GTTTAAGAAG GTTCTTGAGA 
    AGTTATCAAC AGAAGGTTAT AGCTTTGGGA ATGCGATTGA TTTGAAGTCT 
    CATTGGGCTA GACATGGAAC CAATAAGTTT GTCACGATCA GATAAAGTTT 
    GAAAAGCTCT TGTTTTTCTT CATTGATCGT GTATATAACA ACAAAACTGT 
    GACCTTTGTT TTTCCTTCTT CTTCAAGGTA ACTTCTTCGT TTTTAAAAAA 
    AAAAAAAAAA

    Gene models with high sequence identity

    1. AT2G01930.1 [+] show detail - basic pentacysteine1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G01930.1

    Model type
    Protein coding
    Short Description
    basic pentacysteine1
    Curator Summary
    BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant.
    Computational Description
    basic pentacysteine1 (BPC1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 2 (TAIR:AT1G14685.1); Has 220 Blast hits to 218 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR