F26716

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26716

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26716

Determination of introduced cDNA(s)

  • RAFL09-49-K04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-K04 - Resource: pda17757

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-49-K04 - full reading
    GGTGTGTTCG CCTTTCTCTC GTACAAGTCA AAATGGCGTC CGTTGTTCTT 
    CGAAACCCTA GCTCGAAGCG CCTTGTTCCA TTCTCTTCCC AGATCTACTC
    TCGCTGTGGT GCTTCCGTTA CTTCCTCTTA CTCGATCTCT CATTCTATCG
    GTGGAGATGA TCTCTCTTCC TCTACCTTCG GAACCTCCTC CTTCTGGAGA
    TCCATGGCCA CTTTTACTCG AAATAAACCT CATGTAAATG TTGGAACTAT
    TGGGCATGTT GATCATGGCA AGACCACTTT AACTGCTGCA ATCACAAAGG
    TTCTTGCTGA GGAGGGCAAA GCTAAAGCTA TTGCCTTTGA TGAAATTGAT
    AAAGCTCCTG AAGAGAAGAA GAGAGGAATT ACTATTGCCA CGGCTCATGT
    GGAGTATGAA ACTGCAAAGC GTCACTATGC TCATGTGGAT TGCCCTGGAC
    ACGCAGATTA TGTTAAAAAT ATGATTACTG GAGCTGCGCA AATGGATGGC
    GGAATTCTTG TGGTTTCAGG ACCAGATGGA CCCATGCCGC AGACAAAGGA
    ACATATTCTA CTTGCACGCC AGGTTGGTGT TCCCTCACTT GTGTGCTTCT
    TGAACAAAGT TGATGTGGTG GATGACCCTG AGCTCTTGGA GCTTGTCGAG
    ATGGAACTAC GTGAGCTCCT CAGCTTCTAC AAGTTTCCTG GGGATGATAT
    TCCCATCATC CGAGGATCTG CTCTGTCCGC ATTACAGGGC ACCAATGATG
    AAATTGGAAG GCAAGCTATA TTAAAGCTGA TGGATGCTGT TGATGAATAT
    ATACCTGACC CTGTTCGCGT CCTTGACAAG CCTTTCTTGA TGCCAATTGA
    AGATGTTTTC TCAATTCAAG GACGTGGAAC TGTTGCAACC GGTCGTATCG
    AACAGGGAGT CATTAAAGTG GGTGAAGAAG TTGAGATATT GGGTTTACGT
    GAGGGGGGTG TTCCACTGAA ATCGACTGTA ACTGGGGTTG AGATGTTCAA
    GAAGATTTTG GATAATGGAC AGGCTGGTGA TAATGTAGGA CTTCTTCTGC
    GTGGGCTAAA GAGAGAAGAC ATTCAGCGTG GAATGGTGAT TGCTAAGCCT
    GGTTCATGCA AGACATACAA GAAGTTTGAA GCAGAGATTT ACGTGCTCAC
    AAAGGATGAA GGTGGACGTC ACACTGCATT TTTCTCTAAC TACAGGCCTC
    AGTTTTACTT GAGGACTGCA GATATCACTG GCAAAGTGGA ATTACCCGAA
    AACGTGAAGA TGGTTATGCC TGGTGACAAT GTCACAGCTG TTTTCGAGTT
    AATCATGCCT GTCCCACTCG AAACAGGTCA AAGATTTGCC TTAAGGGAAG
    GAGGTAGAAC AGTTGGAGCT GGTGTTGTAT CAAAAGTGAT GACCTAAACT
    ACTCAAAAGC ACATTCTTCT CCTTCGTTCT CTAGGAATCC ATCAATTTCG
    AGATTTTTCT TTTTGTCTTT TTGCTGCTTT GAGATTTCTT TGGGTAGATC
    AAATAAACAG AGAGAAACTT AATTTATGTT TCCAATGAGA AAGATTAGGG
    CAGAGGGCAC GAAACGTCTA TTTCTTTTTG ATGCTTCCTA CTTTGTGAAA
    CTTTCAAAAA GCCACTTCCA ATTCTTTCTC ACCTTCGTGG TTTGTCAAGT
    ATTTGTTTTT ATTTCTTTAA ACCAAAATCA TGAATTTTCG ATTATTAAAT
    TAAGTTGACC AGAAATGAAA TATTTATTTC ATGTTTAGCG AAAAAAAAAA

    Gene models with high sequence identity

    1. AT4G02930.1 [+] show detail - GTP binding Elongation factor Tu family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Translation elongation factor EFTu/EF1A, bacterial/organelle 1.1e-270
    HMMTigr Small GTP-binding protein 4e-09
    FPrintScan Protein synthesis factor, GTP-binding 1.7e-22
    FPrintScan Protein synthesis factor, GTP-binding 1.7e-22
    FPrintScan Protein synthesis factor, GTP-binding 1.7e-22
    FPrintScan Protein synthesis factor, GTP-binding 1.7e-22
    FPrintScan Protein synthesis factor, GTP-binding 1.7e-22
    PatternScan Protein synthesis factor, GTP-binding 0
    HMMPfam Protein synthesis factor, GTP-binding 2e-60
    HMMPfam Translation elongation factor EFTu/EF1A, C-terminal 9.6e-36
    HMMPfam Translation elongation factor EFTu/EF1A, domain 2 6e-17
    Gene3D no description 7.1e-57
    Gene3D no description 1.9e-46
    Gene3D no description 5.6e-18
    superfamily P-loop containing nucleoside triphosphate hyd 1.5e-63
    superfamily Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal 1.5e-37
    superfamily Translation elongation/initiation factor/Ribosomal, beta-barrel 1.5e-33
    HMMPanther Translation elongation factor EFTu/EF1A, bacterial/organelle 4.7e-234
    HMMPanther TRANSLATION FACTOR 4.7e-234

    See the detailed result >

    AT4G02930.1

    Model type
    Protein coding
    Short Description
    GTP binding Elongation factor Tu family protein
    Computational Description
    GTP binding Elongation factor Tu family protein; FUNCTIONS IN: translation elongation factor activity, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog E1B (TAIR:AT4G20360.1); Has 89361 Blast hits to 89296 proteins in 17600 species: Archae - 1195; Bacteria - 40691; Metazoa - 19476; Fungi - 9897; Plants - 2075; Viruses - 6; Other Eukaryotes - 16021 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR