F26716

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	dark green (PATO:0001249) (Cauline leaf::Color::dark) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased width (PATO:0000599) (Cauline leaf::Shape::narrow) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26716

Determination of introduced cDNA(s)

RAFL09-49-K04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-K04 - Resource: pda17757

full reading [+] show sequence

GGTGTGTTCG CCTTTCTCTC GTACAAGTCA AAATGGCGTC CGTTGTTCTT 
CGAAACCCTA GCTCGAAGCG CCTTGTTCCA TTCTCTTCCC AGATCTACTC 
TCGCTGTGGT GCTTCCGTTA CTTCCTCTTA CTCGATCTCT CATTCTATCG 
GTGGAGATGA TCTCTCTTCC TCTACCTTCG GAACCTCCTC CTTCTGGAGA 
TCCATGGCCA CTTTTACTCG AAATAAACCT CATGTAAATG TTGGAACTAT 
TGGGCATGTT GATCATGGCA AGACCACTTT AACTGCTGCA ATCACAAAGG 
TTCTTGCTGA GGAGGGCAAA GCTAAAGCTA TTGCCTTTGA TGAAATTGAT 
AAAGCTCCTG AAGAGAAGAA GAGAGGAATT ACTATTGCCA CGGCTCATGT 
GGAGTATGAA ACTGCAAAGC GTCACTATGC TCATGTGGAT TGCCCTGGAC 
ACGCAGATTA TGTTAAAAAT ATGATTACTG GAGCTGCGCA AATGGATGGC 
GGAATTCTTG TGGTTTCAGG ACCAGATGGA CCCATGCCGC AGACAAAGGA 
ACATATTCTA CTTGCACGCC AGGTTGGTGT TCCCTCACTT GTGTGCTTCT 
TGAACAAAGT TGATGTGGTG GATGACCCTG AGCTCTTGGA GCTTGTCGAG 
ATGGAACTAC GTGAGCTCCT CAGCTTCTAC AAGTTTCCTG GGGATGATAT 
TCCCATCATC CGAGGATCTG CTCTGTCCGC ATTACAGGGC ACCAATGATG 
AAATTGGAAG GCAAGCTATA TTAAAGCTGA TGGATGCTGT TGATGAATAT 
ATACCTGACC CTGTTCGCGT CCTTGACAAG CCTTTCTTGA TGCCAATTGA 
AGATGTTTTC TCAATTCAAG GACGTGGAAC TGTTGCAACC GGTCGTATCG 
AACAGGGAGT CATTAAAGTG GGTGAAGAAG TTGAGATATT GGGTTTACGT 
GAGGGGGGTG TTCCACTGAA ATCGACTGTA ACTGGGGTTG AGATGTTCAA 
GAAGATTTTG GATAATGGAC AGGCTGGTGA TAATGTAGGA CTTCTTCTGC 
GTGGGCTAAA GAGAGAAGAC ATTCAGCGTG GAATGGTGAT TGCTAAGCCT 
GGTTCATGCA AGACATACAA GAAGTTTGAA GCAGAGATTT ACGTGCTCAC 
AAAGGATGAA GGTGGACGTC ACACTGCATT TTTCTCTAAC TACAGGCCTC 
AGTTTTACTT GAGGACTGCA GATATCACTG GCAAAGTGGA ATTACCCGAA 
AACGTGAAGA TGGTTATGCC TGGTGACAAT GTCACAGCTG TTTTCGAGTT 
AATCATGCCT GTCCCACTCG AAACAGGTCA AAGATTTGCC TTAAGGGAAG 
GAGGTAGAAC AGTTGGAGCT GGTGTTGTAT CAAAAGTGAT GACCTAAACT 
ACTCAAAAGC ACATTCTTCT CCTTCGTTCT CTAGGAATCC ATCAATTTCG 
AGATTTTTCT TTTTGTCTTT TTGCTGCTTT GAGATTTCTT TGGGTAGATC 
AAATAAACAG AGAGAAACTT AATTTATGTT TCCAATGAGA AAGATTAGGG 
CAGAGGGCAC GAAACGTCTA TTTCTTTTTG ATGCTTCCTA CTTTGTGAAA 
CTTTCAAAAA GCCACTTCCA ATTCTTTCTC ACCTTCGTGG TTTGTCAAGT 
ATTTGTTTTT ATTTCTTTAA ACCAAAATCA TGAATTTTCG ATTATTAAAT 
TAAGTTGACC AGAAATGAAA TATTTATTTC ATGTTTAGCG AAAAAAAAAA

Gene models with high sequence identity

AT4G02930.1 [+] show detail - GTP binding Elongation factor Tu family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Translation elongation factor EFTu/EF1A, bacterial/organelle	1.1e-270
HMMTigr	Small GTP-binding protein	0.000000004
FPrintScan	Protein synthesis factor, GTP-binding	1.7e-22
FPrintScan	Protein synthesis factor, GTP-binding	1.7e-22
FPrintScan	Protein synthesis factor, GTP-binding	1.7e-22
FPrintScan	Protein synthesis factor, GTP-binding	1.7e-22
FPrintScan	Protein synthesis factor, GTP-binding	1.7e-22
PatternScan	Protein synthesis factor, GTP-binding	0
HMMPfam	Protein synthesis factor, GTP-binding	2e-60
HMMPfam	Translation elongation factor EFTu/EF1A, C-terminal	9.6e-36
HMMPfam	Translation elongation factor EFTu/EF1A, domain 2	6e-17
Gene3D	no description	7.1e-57
Gene3D	no description	1.9e-46
Gene3D	no description	5.6e-18
superfamily	P-loop containing nucleoside triphosphate hyd	1.5e-63
superfamily	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	1.5e-37
superfamily	Translation elongation/initiation factor/Ribosomal, beta-barrel	1.5e-33
HMMPanther	Translation elongation factor EFTu/EF1A, bacterial/organelle	4.7e-234
HMMPanther	TRANSLATION FACTOR	4.7e-234

See the detailed result >

AT4G02930.1

Model type: Protein coding
Short Description: GTP binding Elongation factor Tu family protein
Computational Description: GTP binding Elongation factor Tu family protein; FUNCTIONS IN: translation elongation factor activity, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog E1B (TAIR:AT4G20360.1); Has 89361 Blast hits to 89296 proteins in 17600 species: Archae - 1195; Bacteria - 40691; Metazoa - 19476; Fungi - 9897; Plants - 2075; Viruses - 6; Other Eukaryotes - 16021 (source: NCBI BLink).
Link: InterPro Scan - TAIR