F26722

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26722

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26722

Determination of introduced cDNA(s)

  • RAFL04-19-M20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-19-M20 - Resource: pda00581

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-19-M20 - full reading 
    AGGGTTTTTC TCTGAGGAAG AAGCGTTTCA TTTCTCTGAA TTTCATCGAA 
    AATGGCGGAA AGAGGAGGAG AAGGCGGCGC AGAGCGTGGC GGTGACCGTG 
    GTGACTTCGG ACGTGGATTC GGCGGTGGAC GTGGAGGTGG CCGTGGCCGT 
    GATCGTGGTC CAAGAGGCCG TGGAAGACGT GGAGGCCGTG CCTCGGAAGA 
    AACGAAATGG GTTCCAGTGA CCAAACTAGG TCGTCTAGTG GCTGACAATA 
    AAATAACGAA GCTAGAGCAG ATCTATCTCC ATTCTCTCCC AGTAAAGGAG 
    TACCAAATCA TAGATCATCT TGTTGGTCCT ACGTTGAAAG ACGAGGTTAT 
    GAAGATCATG CCTGTTCAGA AACAAACCAG AGCTGGTCAA AGGACTAGAT 
    TCAAGGCCTT TGTTGTTGTT GGTGATGGTA ATGGTCATGT TGGTTTGGGT 
    GTCAAGTGTT CTAAGGAAGT TGCTACTGCC ATTAGAGGAG CTATTATTCT 
    TGCTAAGCTC TCTGTTGTTC CGGTGAGGAG AGGTTACTGG GGGAATAAGA 
    TTGGGAAGCC ACACACTGTG CCTTGTAAGG TTACTGGGAA GTGTGGCTCT 
    GTTACTGTGA GAATGGTTCC TGCTCCGAGA GGTTCTGGTA TTGTTGCTGC 
    TAGGGTTCCT AAGAAGGTTC TTCAGTTCGC TGGTATTGAT GATGTCTTTA 
    CTTCTTCCAG AGGATCTACT AAAACTCTTG GAAACTTTGT CAAGGCGACG 
    TTTGACTGCT TACAGAAGAC ATATGGGTTC CTTACACCAG AGTTCTGGAA 
    AGAGACTAGA TTCTCCAGAT CGCCCTACCA AGAGCACACT GATTTCTTGT 
    CGACTAAGGC TGTTTCTGCA ACCAAGGTTA TCACGGAGGG TGAAGACCAA 
    GCTTAAGACC TTCATGAGAT AAGTTTTGGT TGTTCTTAAT ACTAATTCCT 
    ACTTTGAAAA AGAGTATTTT TTTTTCTTGA TTATCTATGA GTTTTGTTAT 
    TGGTGGTTTC GTTACTGTTT TGGATTTTGT TAGATGTTTG CCTTAATGCA 
    AATTTCAATG AAATAGCTTT T

    Gene models with high sequence identity

    1. AT1G58380.1 [+] show detail - Ribosomal protein S5 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein S5, eukaryotic/archaeal 4e-136
    PatternScan Ribosomal protein S5, N-terminal, conserved site 0
    HMMPfam Ribosomal protein S5, N-terminal 3.4e-29
    HMMPfam Ribosomal protein S5, C-terminal 7.1e-24
    superfamily Ribosomal protein S5 domain 2-type fold 1.5e-27
    superfamily dsRNA-binding domain-like 2.2e-23
    Gene3D Double-stranded RNA-binding-like 1.3e-21
    Gene3D Ribosomal protein S5 domain 2-type fold, subgroup 6.4e-18
    HMMPanther 40S RIBOSOMAL PROTEIN S2 6.6e-166
    HMMPanther Ribosomal protein S5 6.6e-166
    ProfileScan Ribosomal protein S5, N-terminal 23.07

    See the detailed result >

    AT1G58380.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S5 family protein
    Computational Description
    XW6; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane, chloroplast, membrane; EXPRESSED IN: guard cell, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G59359.1); Has 10515 Blast hits to 9714 proteins in 2923 species: Archae - 262; Bacteria - 5279; Metazoa - 1538; Fungi - 549; Plants - 325; Viruses - 26; Other Eukaryotes - 2536 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR