F26732

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26732

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26732

Determination of introduced cDNA(s)

  • RAFL09-89-N21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-89-N21 - Resource: pda06943

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-89-N21 - full reading 
    ATTGAGCTTC TTTCTTTTTT CCTGAGTCTT TTAGTCTGAT CTCTTACAAG 
    AATGGCGTTC GCAGGAACAA CCCAGAAATG CATGGCATGT GACAAAACAG 
    TTTATCTTGT CGACAAGTTA ACCGCCGATA ACCGGGTCTA CCACAAAGCT 
    TGTTTCCGAT GTCACCATTG CAAAGGAACT CTCAAGCTTA GCAATTACAA 
    CTCCTTTGAA GGAGTTCTCT ACTGCAGACC ACATTTCGAT CAAAACTTCA 
    AGAGAACTGG AAGTCTTGAG AAAAGCTTCG AAGGGACACC AAAGATTGGG 
    AAACCTGATA GGCCTTTGGA GGGAGAGAGA CCTGCTGGAA CCAAAGTTTC 
    GAATATGTTT GGTGGAACAC GAGAGAAATG CGTTGGTTGC GACAAAACCG 
    TGTATCCAAT TGAGAAGGTA TGGTGAATGG AACATTGTAC CACAAGAGCT 
    GCTTCAAGTG TACACATGGA GGCTGCACGA TAAGCCCTTC GAATTACATA 
    GCTCACGAGG GTAAGCTATA TTGCAAGCAT CATCATATTC AGCTGATCAA 
    GGAGAAAGGA AACTTGAGCC AGCTCGAAGG AGGAGGAGAG AATGCCGCCA 
    AGGACAAAGT CGTCGCTGCT TAAAGAAACA ATTCAATCTC TCTGGGATGA 
    TTTTGACTAT CGAAGAATCA AAAGAGTCAC TACTTCTCCA TCGATCGATA 
    ACATATATTG GTTTTGTTTC TTCCTACGTT TGTGTTTTTC TTTTTGGTCT 
    TTAATATGTT TTTTTTTTTT TTGGGACCTT TGTTCACTCT TTTATTGGGT 
    TTCTTGAAAT GAAACTAGAG AAACAAAGAA ATAATGGATG TTTGCTTATG 
    AGATATGAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT1G10200.1 [+] show detail - GATA type zinc finger transcription factor family protein
      E-value: 0; Score: 99.77

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glucocorticoid receptor-like (DNA-binding dom 2e-15
    superfamily Glucocorticoid receptor-like (DNA-binding dom 4.9e-07
    superfamily Glucocorticoid receptor-like (DNA-binding dom 1.3e-06
    HMMPanther TRANSCRIPTION FACTOR L2 1.8e-41
    HMMPanther LIM DOMAIN CONTAINING PROTEIN 1.8e-41
    HMMPanther TRANSCRIPTION FACTOR L2 2.4e-14
    HMMPanther LIM DOMAIN CONTAINING PROTEIN 2.4e-14
    PatternScan Zinc finger, LIM-type 0
    HMMPfam Zinc finger, LIM-type 3.3e-13
    HMMPfam Zinc finger, LIM-type 2.9e-12
    ProfileScan Zinc finger, LIM-type 13.147
    Gene3D Zinc finger, LIM-type 3.7e-21
    Gene3D Zinc finger, LIM-type 1.5e-09
    HMMSmart Zinc finger, LIM-type 4.6e-11

    See the detailed result >

    AT1G10200.1

    Model type
    Protein coding
    Short Description
    GATA type zinc finger transcription factor family protein
    Computational Description
    WLIM1; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G39900.1); Has 4354 Blast hits to 2727 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 3462; Fungi - 43; Plants - 506; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR