F26749

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26749

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Original: F26749

Determination of introduced cDNA(s)

  • RAFL04-15-A14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-A14 - Resource: pdz87382

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL04-15-A14 - 5 prime EST 
    GATACAACAA GCTTCTCTCT CTGGTAGCCA TGGCTTCGGC TACTTTCTCT 
    GTGGCCAAAC CATCTCTTCA GGGTTTTTCT GAGTTCTCAG GACTTCGAAA 
    CTCCTCTGCT CTTCCCTTTG CCAAGAGATC TTCTTCCGAT GAGTTTGTTT 
    CCTTCGTCAG TTTCCAAACT TCTGCAATGA GAAGCAATGG TGGATACAGG 
    AAAGGGGTGA CCGAGGCCAA GATAAAGGTA GCCATCAATG GGTTCGGTAG 
    GATTGGTAGG AACTTCTTGA GGTGTTGGCA TGGTCGTAAG GACTCTCCTC 
    TTGATGTCGT TGTCATTAAC GACACTGGTG GTGTTAAACA AGCATCACAT 
    CTCCTCAAAT ACGACTCAAC TCTTGGAATC TTTGACGCTG ATGTCAAACC 
    TTCAGGAGAC TCAGCTCTCT CTGTTGATGG AAAGATCATC AAGATTGTAT 
    CTGATCGTAA CCCATCTAAT CTCCCCTGGG GGGAACTAGG CATTGACTTA 
    GTTATCGAAG GAACCGGAGT GTTTGTTGAC AGAGACGGTG CTGGGAAGCA 
    CCTTCAGGCT GGAGCCAAGA AGGTTCTTAT CACTGCACCT GGAAAAGGTG 
    ACATCCCAAC TTATGTCGTT GGTGTCAATG CTGAACTTTA CAGCCATGAA 
    GATACGATCA TCAGCAATGC G

    Gene models with high sequence identity

    1. AT1G12900.1 [+] show detail - glyceraldehyde 3-phosphate dehydrogenase A subunit 2
      E-value: 0; Score: 100.00

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL04-15-A14 - 3 prime EST 
    AAGCAGAGGA TGTAATATGT TTGAATCAAG TTTATTACTA TAAATTATAG 
    AGCACAAATA CATAATAAAC TCAGGAACTA CAATTATACA TTCCGAATCA 
    TGTAACAGTA AAAAATAATG GAGCAGACAT CAAGAGGTTG TTGAGTCTTC 
    ACTTCCAGTT ATTGGCAACA ATGTCAGCCA AATCAACGAC TCTCTGTGAG 
    TAACCCCATT CATTGTCATA CCAAGCAATC ACTTTAACCA TATCATCTCC 
    CATAACCATT GTGAGGGAAG AATCAATAGT GGAGGATACA TCAGAGCACC 
    TGAAGTCAAC AGAGACAAGA GGCTCATCAC AGACGTCAAG GATACCTTTA 
    AGCTCTTTCT CAGCTGCATC TCTGAAAGCA GCATTGACTT CTTCAGCAAA 
    AGTTTTCTTG GAGACTTGCA CGACTAAGTC AACCACTGAA ACGTTTGGAG 
    TTGGCACACG CAATGCAATT CCGTTAAGTT TTCCTTTGAG GTTAGGAAGC 
    ACAAGAGCCA CAGCTTTGGC TGCTCCTGTA GATGTTGGAA CAATGTTCAA 
    AGCTGCTGCT CTTGCTCTCC TTAGATCACG GTGGCTCGCA TCTAACAACC 
    TTTGGTCACC AGTGTATGAG TGAGTAGTTG TCATTGTACC CTTTATGATC 
    CCAAATTTCT GGTCAAGAAC CTTGACGAAT GGAGCGAGAC AG

    Gene models with high sequence identity

    1. AT1G12900.3 [+] show detail - glyceraldehyde 3-phosphate dehydrogenase A subunit 2
      E-value: 0; Score: 100.00

    AT1G12900.1

    Model type
    Protein coding
    Short Description
    glyceraldehyde 3-phosphate dehydrogenase A subunit 2
    Computational Description
    glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glycolysis, glucose metabolic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1); Has 24704 Blast hits to 24695 proteins in 6149 species: Archae - 47; Bacteria - 10700; Metazoa - 2230; Fungi - 2778; Plants - 3753; Viruses - 0; Other Eukaryotes - 5196 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT1G12900.3

    Model type
    Protein coding
    Short Description
    glyceraldehyde 3-phosphate dehydrogenase A subunit 2
    Computational Description
    glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glycolysis, glucose metabolic process; LOCATED IN: apoplast, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR