F26751

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26751

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26751

Determination of introduced cDNA(s)

  • RAFL02-06-H10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-06-H10 - Resource: pda02238

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-06-H10 - full reading 
    AAATTGACGA CAGGCGTTAG TGGCGATTGG CGATGGCAGC TCCTGCGGTG 
    GAGGCAACCG TCGCAAGTGC TCTCCGCTCT GTGATTCTTA GAGCTCGTAA 
    GGCGGCGGAG CAAGTAGGAA GAGATCCCGA GCGGGTCAGG GTCCTTCCAG 
    TCTCCAAGAC TAAACCCGTC TCACTTATCC GCCAAATCTA CGACGCAGGT 
    CACCGTTGCT TCGGCGAGAA TTACGTTCAA GAAATCATCG ATAAAGCTCC 
    ACAGCTTCCG GAAGATATAG AGTGGCATTT CGTGGGGCAT TTACAGAGCA 
    ACAAAGCCAA AACGCTATTG ACTGGAGTCC CAAATTTGGC AATGGTTCAT 
    GGTGTGGATG GAGAAAAGGT AGCAAATCAT CTAGATCGAG CTGTTTCAAA 
    TCTTGGGAGA CATCCACTAA AGGTTTTGGT CCAAGTGAAC ACAAGCGGAG 
    AAGTTTCTAA ATCTGGAATC GAACCTTCTA GCGTTGTAGA GCTAGCAAGA 
    CATGTGAAAC ATCACTGTCC AAATCTGGTA TTCTCCGGAT TAATGACTAT 
    TGGGATGCCT GATTATACGT CTACCCCAGA GAACTTCAGG ACACTTTCAA 
    ACTGTAGAGC TGATGTATGC AAGGCACTTG GAATGGCTGA GGATCAATTT 
    GAACTGTCCA TGGGCATGTC TGGTGACTTC GAGCTAGCGA TTGAGATGGG 
    AAGCACCAAT GTGAGGGTTG GTTCCACCAT TTTCGGACCA AGAGAGTACC 
    CCAAGAAAAC AACTTAGCTA CTATGCTCAA ACACTTGTTG TAAAATTCAT 
    GTATAATGTT ATTTTGTCGA TTATTTTAAA CAATTTTATT CTTCATTGAT 
    AAACTTAGGT GTATTCACAA AGTTACTTTA TAGAAAATTA GAAATCAATA 
    CATTGTTAAA AAAAAAAAAA AG

    Gene models with high sequence identity

    1. AT4G26860.1 [+] show detail - Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Predicted pyridoxal phosphate-dependent enzyme, YBL036C type 2.1e-95
    HMMPIR Predicted pyridoxal phosphate-dependent enzyme, YBL036C type 3e-98
    Gene3D no description 2.9e-73
    superfamily PLP-binding barrel 5.8e-75
    HMMTigr Predicted pyridoxal phosphate-dependent enzyme, YBL036C type 1.2e-60
    PatternScan Predicted pyridoxal phosphate-dependent enzyme, YBL036C type 0
    HMMPfam Alanine racemase, N-terminal 1.5e-43

    See the detailed result >

    AT4G26860.1

    Model type
    Protein coding
    Short Description
    Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
    Computational Description
    Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (TAIR:AT1G11930.2); Has 7173 Blast hits to 7173 proteins in 2384 species: Archae - 21; Bacteria - 4279; Metazoa - 130; Fungi - 133; Plants - 56; Viruses - 0; Other Eukaryotes - 2554 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR