F26810

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26810

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F26810

Determination of introduced cDNA(s)

  • RAFL05-08-P24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-08-P24 - Resource: pda01074

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-08-P24 - full reading 
    ACACATCCAA CAACAAAACA CAAGCGTAGA AAACAAAACT CAACTAATTG 
    TGTTATCACC CAAAAGAGAA GAGCAAACAC AATGGCTTTC GCTTTGAGGT 
    TCTTCACATG CTTTGTTTTG ACAGTGTTCA TCGTTGCATC AGTGGATGCA 
    GCAATAACAT GTGGCACAGT GGCAAGTAGC TTGAGTCCAT GTCTAGGCTA 
    CCTATCAAAG GGTGGGGTGG TGCCACCTCC GTGCTGTGCA GGAGTCAAAA 
    AGTTGAACGG TATGGCTCAA ACCACACCCG ACCGCCAACA AGCATGCAGA 
    TGCTTACAGT CCGCTGCAAA AGGGGTTAAT CCAAGTCTAG CCTCTGGCCT 
    TCCTGGAAAG TGCGGTGTTA GCATCCCCTA TCCCATCTCC ACGAGCACCA 
    ACTGCGCCAC CATCAAGTGA AGTGGGGAAT AACGACATCA TTTGCCTGAA 
    GAGTATGGTT TCGTATACGT AAAATAAGAC GGCTATCTAA GCTGATATTT 
    ACCTTGTCTT TGTTTGTCTT GATGGCTTTG TAATCTTTTG CTTTGTTATG 
    TTGTATACTT GTGTCTTAAC ATGTTTAAGA TATGATAATA TATAGTATCG 
    GTACCTTATT AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT5G59310.1 [+] show detail - lipid transfer protein 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 7.3e-30
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 1.5e-15
    Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 4.8e-30
    FPrintScan Plant lipid transfer protein/Par allergen 4.1e-22
    FPrintScan Plant lipid transfer protein/Par allergen 4.1e-22
    FPrintScan Plant lipid transfer protein/Par allergen 4.1e-22
    FPrintScan Plant lipid transfer protein/Par allergen 4.1e-22
    PatternScan Plant lipid transfer protein/Par allergen 0
    HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 3.5e-08

    See the detailed result >

    AT5G59310.1

    Model type
    Protein coding
    Short Description
    lipid transfer protein 4
    Curator Summary
    Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
    Computational Description
    lipid transfer protein 4 (LTP4); FUNCTIONS IN: lipid binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus, lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 3 (TAIR:AT5G59320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR