F26817

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26817

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26817

Determination of introduced cDNA(s)

  • RAFL09-48-L24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-L24 - Resource: pda06403

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-48-L24 - full reading 
    AAAAGACTAT CAAAAGAAGA AACAGAGCAA ATTTCATTCT CTCAGAACAA 
    ATATATACAT ATTAATCAGA ATCAGGAAAA GTGAAGAAGC GAAAGAGAGA 
    AGAAGATCGG ATGGGAGTGG ATTACTACAA AGTCCTCCAA GTCGATCGCA 
    GCGCAAGCGA CGATGATCTC AAGAAAGCTT ATCGTAAACT TGCCATGAAA 
    TGGCATCCCG ACAAAAATCC CAACAACAAA AAGGATGCCG AAGCTATGTT 
    CAAACAAATA TCCGAAGCTT ACGAGGTACT AAGTGATCCT CAGAAGAAAG 
    CTGTGTATGA TCAATATGGT GAGGAAGGTT TGAAAGGGAA CGTGCCACCT 
    CCGGATGCAG GTGGAGCTAC TTACTTCTCT ACCGGGGATG GTCCAACGTC 
    CTTCAGGTTC AACCCGAGAA ATGCGGATGA TATATTTGCT GAGTTCTTTG 
    GCTTCTCTAG CCCATTTGGC GGCGGAAGAG GTGGTACAAG ATTCTCTAGC 
    AGCATGTTTG GTGATAATAT GTTTGCTTCT TTCGGCGAAG GAGGAGGCGG 
    TGGTGGTGGC TCGATGCATC ACGGTGGAGC TAGGAAGGCT GCTCCTATCG 
    AAAACAAGTT GCCTTGTAGC CTTGAAGATC TTTACAAAGG AACCACCAAA 
    AAGATGAGGA TTTCTAGGGA GATTGCTGAT GTCAGTGGCA AGACGATGCA 
    GGTGGAAGAG ATTTTGACCA TTGATGTGAA ACCAGGATGG AAGAAAGGCA 
    CAAAGATCAC GTTCCCAGAG AAAGGCAATG AGCAACCCGG TGTGATTCCA 
    GCGGATTTAG TCTTCATAAT CGACGAGAAG CCTCACCCGG TTTTCACTCG 
    AGAGGGTAAC GACCTCATAG TCACACAGAA GATCTCACTT GTTGAGGCCT 
    TGACTGGTTA CACAGTGAAC CTGACTACTC TTGATGGTCG GAGACTGACA 
    ATTCCAGTCA CCAACGTGGT CCATCCCGAG TACGAGGAAG TGGTACCGAA 
    GGAAGGGATG CCATTGCAAA AAGACCAGAC TAAGAGAGGT AACTTGAGGA 
    TCAAATTTAA CATCAAGTTC CCTACAAGGT TAACCTCAGA GCAGAAGACA 
    GGAGTGAAGA AACTTCTCGG ATGAAATGAG TTATAGTCAG CACATTTCAG 
    ACAAAACAAT GTTGAACAGA AGAGGAACAA GAAAATCATG TTGCAGACCA 
    CAGGGATTGT GATTAAATAC TGTTGTGACC TTTTTGATCG ATTTGTAACA 
    TATGTACGAT TGGATACCTC CTAATAAATT TGTTACTTTC TCTAC

    Gene models with high sequence identity

    1. AT2G20560.1 [+] show detail - DNAJ heat shock family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Heat shock protein DnaJ, N-terminal 1e-27
    Gene3D no description 1.6e-25
    Gene3D no description 1.5e-25
    ProfileScan Heat shock protein DnaJ, N-terminal 24.541
    HMMPanther HSP40-RELATED 6.9e-189
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 6.9e-189
    PatternScan Heat shock protein DnaJ, conserved site 0
    HMMSmart Heat shock protein DnaJ, N-terminal 4.4e-33
    superfamily Heat shock protein DnaJ, N-terminal 3.2e-33
    superfamily HSP40/DnaJ peptide-binding 6.4e-22
    superfamily HSP40/DnaJ peptide-binding 8.2e-17
    HMMPfam Chaperone DnaJ, C-terminal 4.4e-30
    HMMPfam Heat shock protein DnaJ, N-terminal 5.9e-28

    See the detailed result >

    AT2G20560.1

    Model type
    Protein coding
    Short Description
    DNAJ heat shock family protein
    Computational Description
    DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G28480.1); Has 27936 Blast hits to 27733 proteins in 3449 species: Archae - 187; Bacteria - 10270; Metazoa - 4781; Fungi - 2609; Plants - 2869; Viruses - 17; Other Eukaryotes - 7203 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR