F26821

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26821

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F26821

Determination of introduced cDNA(s)

  • RAFL06-67-A19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-67-A19 - Resource: pda03265

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-67-A19 - full reading 
    ACACAGAGCA TTCCGTGGAA AAACCCCAAT AAAATCTCAG GCAAATCTCC 
    GGCGTAATCG ATGGCGGAGG AGAATCAAGA AGAAACCCTA GAACTCAAAC 
    CAAGTAGAAA ACCACCACAC TTTGTGCTAA TACATGGCAT GAGCTTAGGA 
    TCATGGTGCT GGTACAAGAT CAAATGTCTC ATGGAAGTCT CTGGCTTCAC 
    CGTCACTTGC ATCGACCTCA AATCCTCCGG CATCGATTCT TCATCCGTGG 
    ATTCACTCAC TACCTTCGAC CAATACAACC AACCACTCAT CGACTTCCTC 
    TCCTCTTTCC CCGAACAAGA ACAGGTGATA CTTGTGGGTC ACAGTGCAGG 
    AGGGCTTAGC CTAACGAGTG CGATACAGAG ATTCCCTAAG AAGATCTGTC 
    TCGCTGTTTT TATTGGAGCT TCGATGCTCA AAAACGGGCT TCAGACAGAT 
    GAAGATATGA AAGATGGAGT GCCTGATCTA TCAGAACATG GTGATGTCTA 
    CGAGCTTGGT TTTGGTCTAG GACCGGAGAA TCCTCCCACC AGTGCTATTA 
    TCAAACCTGA ATACCGACGA AAACTACTTT ACCACATGAG TCCTCAACAG 
    GAATGTTCCT TGGCTGCATT AATGATGAGA CCAGCACCAA TTTTGGCGTT 
    AACGACAGCA AAACTGGAAG AAGAGGAAAA AGAAAAAGGA CAAGAGGAGC 
    AAGTGCCGCG CGTGTACATC AAGACGTTAC TCGACCGGGT CATGAAACCG 
    GAGCAGCAAG ACGCGATGAT AAGACGGTGG CCACCTAGCC AAGTTTACGA 
    ATTGGAGAGC GACCATTCTC CTTTCTTCTC TAACCCTTTT GTTCTCTTTG 
    GTTTACTCAT CAAAGCTGCC GTTTCCGTCG GTTCTATCTA AAACTATTTA 
    AAGAACTAAA GGATTGCCTT TTGTTGGTTT TAAAACCGGT TAAGTGATCA 
    GTATTGTCGA GGGAGTGTTT ATTTATTTTT GATTTTTGTG ACATTTTGGT 
    ATTTTATATT AATCGTTTTG AAATAAATTA TGTTTTGCTT ATAAAAAAAA 
    AAAAAAAA

    Gene models with high sequence identity

    1. AT3G10870.1 [+] show detail - methyl esterase 17
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ALPHA/BETA HYDROLASE RELATED 0.0000000000079
    HMMPfam Alpha/beta hydrolase fold-1 0.0000035
    Gene3D no description 1.3e-65
    Coil coiled-coil 0
    superfamily alpha/beta-Hydrolases 1.6e-40

    See the detailed result >

    AT3G10870.1

    Model type
    Protein coding
    Short Description
    methyl esterase 17
    Curator Summary
    Encodes a methyl IAA esterase. Methyl IAA is believed to be an inactive form of auxin that needs to be demethylated to exert a biological effect. MES17 does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. This gene is expressed in several tissues of seedlings and adult plants, with a higher relative level of expression in the seedling shoot apex and the adult stem.
    Computational Description
    methyl esterase 17 (MES17); CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: methyl esterase 18 (TAIR:AT5G58310.1); Has 1383 Blast hits to 1383 proteins in 290 species: Archae - 0; Bacteria - 591; Metazoa - 1; Fungi - 15; Plants - 599; Viruses - 2; Other Eukaryotes - 175 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR