F26842

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick) abnormal (PATO:0000460) (Stem::Others) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26842

Determination of introduced cDNA(s)

RAFL04-17-B18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-B18 - Resource: pda16982

full reading [+] show sequence

CCGATCACCT ACAAAGCAGA GAGAGAGAGA GAGAGAGATA AATGTCCAAG 
CAAAGGTTCA TATAATTTTA TGTTATTAAA TTTGCTTTTT TTTTTGTTAA 
AGTGTTACAT ACATCGATCG ACTTGTTAGT TCAAAGAATC AGTTTAACTC 
CACTGAGCCA TCATGGGTCG ATCTCAAGAA CAGGGACAGG GACAGGGTCC 
GGTTCACAGC ATTCGGCTAT CTACCGTAGG TGCGACCCGG CCGACAGAGA 
CGGGTACGAC CCACGAACCA ACCGGTTTAG ACCTAGCCAT GAAGCTCCAC 
TACCTCAAGG CGGCATACAT TTACTCAGCC GAGACAGCAC GTGACTTAAC 
CGTGAGACAC CTGAAGGAGG CCATGTTCAT GTTGTTCGAC CAGATCGCTT 
GGACCACAGG CAGGTTCTCA AGGAGAGACT CGGGCCGTCC GTACATCAAG 
TGCAACGACT GCGGCACACG TTTCGTGGAA GGTCAATGCA ATCTCACTGT 
GGAGGAGTGG CTCAGTAAAC CGGACCGGTC AGTTGATGAG TTTCTGGTTT 
ATCATCATCC TATTGGACCG GAATTGACGT TCTCTCCTTT GATCTACGTT 
CAGATGACCC GGTTTAAATG CGGAGGATTA GGGTTGGGCC TAAGCTGGGC 
CAATATAATA GGAGACGCAT TCTCTCTGTT CTATGCCTTC AACTTATGGG 
CTAAGGCCAT TACCGGAGAA AAGATTTATG CCCCAACAAC ACCCTCTATA 
GGAGAGAGAA GGTTCCAAAG CCCAAACCCG ACGGTTAAAG ATCCGGTTTC 
AATTAAACGG GTCGAACCCG TTGGAGATCT CTGGGTCACT CCAAACGACA 
AGAAATTGGC GAATTACTGT TTCAATCTCT CAGTCGCCGA TCAGATATCA 
CCACATTTTC CGGCGAAGGG AGATGACTCG ATTCCGGTGT TCGAGATTCT 
CGCCGGAATC ATATGGAAAT GCATAGCTAA AGTTAGGGTA GAGCCAAAGC 
CTGTAACGGT TACGATCATT AAAAAAGATC CGAACGATCT GAAACTTAAT 
GCGATTCGAA ACAGTCAGGT GATCAGCTCA GTGAGCGTGG ATTTTCCGGT 
GGCGGAAGCG ACGGTGGAGG AATTAGTGAA AGCTATGGGG GAAGCGAAGG 
ATGAGAGATG TGGAATTGAG GAGATCGGAG AGAGTTGCGA TGGGAATTTG 
GATTTTGTTG TTTATGGAGC GAAATTGACG TTTCTGGATC TGACTGGTGA 
GGATTTGTAT GAGGCGAAAG TGATGGGGAA GTCGCCGGAG TCGGTTTATT 
GTAATGTGGA GGGGATAGGG GAGGAGGGAT TGGTGGTTGT TTACGCGGCG 
GCGAAATCGG AGGAGAGGGT TGTGACGGTT ACGTTGCCGG AGGAAGAGAT 
GGAGAGGGTA AAATTGGAAT TTAAGAAGTT TGGTTTGATC GCGCCATGAG 
AAATCAAACG GCAAATAATA AGTGTAAACG TGAAGTGATG AAGTGTTATG 
TTATCGTTTT AAAACAAGTA AAGTTTCACA AAAAAAA

Gene models with high sequence identity

AT4G13840.1 [+] show detail - HXXXD-type acyl-transferase family protein
E-value: 0; Score: 99.87

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Transferase	7.4e-26
Gene3D	no description	1.7e-33

See the detailed result >

AT4G13840.1

Model type: Protein coding
Short Description: HXXXD-type acyl-transferase family protein
Computational Description: HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT3G23840.1); Has 1220 Blast hits to 1220 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR