F26905

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26905

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F26905

Determination of introduced cDNA(s)

  • RAFL09-90-A16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-90-A16 - Resource: pda17899

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-90-A16 - full reading 
    GACGCCGATT TGCGAGATAC ACACAGTCTC ACCTAAAAAT CGCAAAAGAA 
    GAAAAATTCG GATCAAAATT GTCTTCAAGC ATCATGGATC CATACAGGGT 
    TCGTCCTTCA AGCGCTCATG ATTCCCCTTT CTTCACTACA AACTCGGGTG 
    CTCCTGTCTG GAACAACAAC TCTTCTTTGA CTGTCGGAAC TCGAGGTCCA 
    ATCCTTCTGG AGGACTATCA TCTGCTTGAG AAACTCGCTA ACTTTGACAG 
    GGAGCGGATT CCTGAGAGGG TTGTTCATGC CAGGGGAGCC AGTGCTAAGG 
    GTTTCTTTGA AGTCACTCAT GACATTACCC AACTTACTTC TGCTGATTTT 
    CTTCGAGGAC CTGGTGTTCA GACTCCTGTT ATCGTTCGTT TCTCAACTGT 
    CATCCATGAG CGTGGCAGTC CCGAGACTCT CAGAGATCCC CGTGGTTTTG 
    CTGTTAAGTT TTACACCAGA GAGGGGAACT TTGATCTTGT TGGGAACAAC 
    TTCCCTGTAT TCTTCGTCCG TGATGGAATG AAATTCCCTG ACATGGTCCA 
    TGCATTGAAA CCGAATCCCA AGTCTCACAT TCAGGAGAAC TGGAGGATAC 
    TGGACTTCTT CTCCCACCAC CCAGAGAGTT TGCACATGTT TTCATTTCTC 
    TTTGATGATC TCGGTATCCC ACAGGACTAC AGGCACATGG AAGGCGCTGG 
    GGTCAACACT TACATGCTAA TCAACAAAGC TGGAAAAGCT CACTATGTGA 
    AATTCCACTG GAAGCCGACT TGTGGGATCA AATGCCTGTC GGATGAGGAA 
    GCTATCAGAG TTGGAGGAGC CAATCACAGC CATGCCACCA AAGATCTCTA 
    TGACTCGATC GCAGCCGGGA ACTATCCGCA GTGGAATCTC TTCGTTCAGG 
    TGATGGATCC TGCCCATGAA GACAAATTTG ACTTCGATCC GCTTGATGTC 
    ACAAAGATCT GGCCTGAAGA TATCTTGCCT TTACAACCTG TTGGTCGCTT 
    GGTCTTGAAC AAAAACATCG ACAACTTCTT TAATGAGAAC GAACAGATTG 
    CATTCTGTCC TGCTCTTGTG GTTCCAGGCA TCCACTATTC AGATGATAAG 
    CTACTCCAGA CCCGGATCTT CTCCTACGCT GATAGTCAGA GACACCGTCT 
    TGGACCAAAC TATCTGCAAC TACCTGTTAA TGCCCCTAAA TGTGCTCACC 
    ACAACAATCA CCATGATGGT TTTATGAACT TCATGCACAG GGATGAGGAG 
    GTCAATTACT TCCCTTCAAG GTTGGATCCA GTTCGCCATG CCGAAAAATA 
    CCCTACAACT CCTATTGTCT GCTCTGGAAA TCGTGAGAAG TGCTTCATCG 
    GGAAGGAGAA CAACTTCAAG CAACCAGGGG AGAGATACCG GTCCTGGGAT 
    TCAGACAGGC AAGAACGATT CGTGAAGCGT TTTGTTGAAG CGCTTTCGGA 
    GCCTCGTGTC ACGCACGAAA TCCGCAGCAT TTGGATCTCT TACTGGTCTC 
    AGGCAGACAA ATCTCTGGGA CAGAAACTAG CAACTCGTCT TAACGTGAGG 
    CCAAACTTCT GAATGATATC ATCTCTAAAG ACTAAGTGAA ATCCTATAAA 
    CTCAATATGC TCCTCTTACG GTTTGGTTTC TAAGTAATCT CGTTTATTGA 
    CAATGAAACG CTTAAAGAAG GGTACTAGTT CCTGTTTGTA ATCTTCTTTT 
    CAAAATATTA ACGATTATTT TCTAAGGCAA ATAAATAAAA AGCTATGACA 
    AAAAAAA

    Gene models with high sequence identity

    1. AT1G20630.1 [+] show detail - catalase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Catalase 0
    PatternScan Catalase 0
    ProfileScan Catalase, N-terminal 75.394
    HMMPfam Catalase related subgroup 1.2e-183
    HMMPfam Catalase-related immune responsive 9.4e-22
    Gene3D Catalase, N-terminal 7.6e-209
    superfamily Catalase-like domain, haem-dependent 2.2e-215
    FPrintScan Catalase related subgroup 2.5e-81
    FPrintScan Catalase related subgroup 2.5e-81
    FPrintScan Catalase related subgroup 2.5e-81
    FPrintScan Catalase related subgroup 2.5e-81
    FPrintScan Catalase related subgroup 2.5e-81
    FPrintScan Catalase related subgroup 2.5e-81
    HMMPanther Catalase-like domain, haem-dependent 7.1e-284

    See the detailed result >

    AT1G20630.1

    Model type
    Protein coding
    Short Description
    catalase 1
    Curator Summary
    Catalyzes the reduction of hydrogen peroxide using heme group as cofactor. Protects cells from toxicity by H2O2.
    Computational Description
    catalase 1 (CAT1); FUNCTIONS IN: catalase activity, cobalt ion binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, cytosolic ribosome, cell wall, peroxisome, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1); Has 6108 Blast hits to 6088 proteins in 1842 species: Archae - 22; Bacteria - 4283; Metazoa - 677; Fungi - 546; Plants - 461; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR