F26912

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26912

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26912

Determination of introduced cDNA(s)

  • RAFL06-88-O07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-88-O07 - Resource: pda07776

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-88-O07 - full reading 
    ACAAAGAGAA AAACATTGGA ACAATTAAAA GAAACAAAAA TTTCCAAATT 
    GATTCTTGTG TTTTCTACAT AAACAAGAAC CAATGACAGA TATTTTCACT 
    TTCTTTACGA TCCAAAATCG TAATGACCAC TTCGACTTTG TTTTAGCTAC 
    AATAGTCATA TCCTCTGTTT TTTGGTATAT ATGGGTTTAC GTCAAATCGA 
    AACGACTGTT TCCACCGTTA CCACCGGGAC CTCGGGGTCT TCCCATCGTC 
    GGAAACCTCC CATTCCTCCA CCCGGAGCTT CACACCTACT TTCACAGTCT 
    AGCTCAAAAA CACGGACCCG TTTTCAAACT ATGGCTCGGC GCAAAACTAA 
    CCATCGTGAT AACCTCTTCC GAAGCAACGC GGGATATTCT AAGAACTAAT 
    GACGTCATCT TTGCGAACGA CGACGTTCCC GTCGCAGGCT CACTCAGCAC 
    GTATGGTGGC GTAGACATTG TCTGGTCACC GTACGGACCA GAATGGCCAA 
    TGCTAAGAAA AATCTGCATT AACAAAATGT TAAGCAACGC CACGTTGGAT 
    TCAAATTCTT TTAGTGCACT TCGCCGCCAG GAGACCAGGC GAACAGTCCG 
    GTATTTGGCA GACCGGGCTC GGGCCGGGTT GGCGGTTAAC GTTGGAGAAC 
    AAATATTTGT CACGATATTA AATGTGGTGA CTCAGATGTT GTGGGGAGAA 
    ACTGTTGCGG ACGACGAGGA GAGAGAGAAA GTTGGAGCTG AATTTTTGGA 
    ATTGATTACG GAAATAATTG ATGTTGTGGG AAAGCCAAAT GTCTCTGATT 
    TTTTCCCGGT TTTGAGCCGG TTTGACCTTC AGGGTTTGGC TAAGCGTGTG 
    CGTAGATCGG CTCAGAGGAT GGACCGGATG TTCGACCGGA TTATAAGTCA 
    ACGGATGGGA ATGGATAAGG GAAGTAAAGG GAACGGTGGA GATTTTTTGA 
    TGGTTTTGTT GAATGCTAAG GATGAAGATG AAAACATGTC CATGAACCAT 
    GTCAAGGCCT TGCTAATGGA TATGGTGCTT GGTGGTACAG ACACATCTTT 
    GAACACAATA GAGTTCGCAA TGGCAGAGCT TATAAACAAA CTGGAGATCA 
    TGAAGAGAGC TCAACAAGAG CTTGACAAGG TTGTGGGGAA AAACAACATC 
    GTCGAAGAAA AACATATCAC TAAACTTCCA TACATTCTCT CCATTATGAA 
    AGAAACCCTA AGGCTTCACC CAGCTCTTCC TCTTCTAATA CCTCGCTGCC 
    CATCTGAAAC CACGGTTATA GGTGGCTACA CAATTCCTAA TGATTCTAAG 
    GTTTTCATCA ATGTGTGGGC GATTCATAGA AATCCGAACG TATGGGAGAA 
    TCCGTTGGAG TTTAATCCTG ATAGGTTTCT TGATAAAGGT TACGACTTTA 
    GTGGTAATGA CTATAGTTAT TTCCCGTTTG GATCTGGCCG GAGAATTTGT 
    GCGGGAATGG CCATGGCCGA GAAAGTTGTT CTTTACAATC TTGCAACGCT 
    TTTGCATTCT TTTGATTGGA GAATTGGGGA AGGAGAGAAA GTGGAGCTCG 
    AGGAGAAGTT TGGGATTTTA TTGAAGTTGA AGAATCCACT TGTTGCAACA 
    CCCGTGCTAA GATTGTCGGA TCCAAACCTT TTTCTTTAAC AGTTTAAGTG 
    AAAGGAGAAA AGTAATTGCT CTTTTTGTTT ATGTGAACTT ATATAATGTT 
    CAATGTGACG GTGTCTTATC TAATGCCGTA TTATGTATTG TTACATATAT 
    GATGATTCCA CCTATATTTT AGTACTATGC ATGATGTAAT ATGTGTTTTA 
    GACATGGTCG CATGGACTAT ATATGTCCAC ATATCCAAAT CCAAGTGATT 
    TCAT

    Gene models with high sequence identity

    1. AT4G12330.1 [+] show detail - cytochrome P450, family 706, subfamily A, polypeptide 7
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cytochrome P450 5.4e-126
    HMMPfam Cytochrome P450 5.3e-98
    Coil coiled-coil 0
    PatternScan Cytochrome P450, conserved site 0
    HMMPanther FLAVONOID 3-HYDROXYLASE 1.9e-277
    HMMPanther Cytochrome P450 1.9e-277
    Gene3D Cytochrome P450 1.8e-121
    FPrintScan Cytochrome P450, E-class, group I 4.2e-44
    FPrintScan Cytochrome P450, E-class, group I 4.2e-44
    FPrintScan Cytochrome P450, E-class, group I 4.2e-44
    FPrintScan Cytochrome P450, E-class, group I 4.2e-44
    FPrintScan Cytochrome P450, E-class, group I 4.2e-44
    FPrintScan Cytochrome P450, E-class, group I 4.2e-44
    FPrintScan Cytochrome P450, E-class, group I 4.2e-44
    FPrintScan Cytochrome P450, E-class, group I 4.2e-44
    FPrintScan Cytochrome P450, C-terminal 2.6e-09
    FPrintScan Cytochrome P450, C-terminal 2.6e-09
    FPrintScan Cytochrome P450, C-terminal 2.6e-09
    FPrintScan Cytochrome P450, C-terminal 2.6e-09

    See the detailed result >

    AT4G12330.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 706, subfamily A, polypeptide 7
    Curator Summary
    member of CYP706A
    Computational Description
    "cytochrome P450, family 706, subfamily A, polypeptide 7" (CYP706A7); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 706, subfamily A, polypeptide 3 (TAIR:AT5G44620.1); Has 32880 Blast hits to 32631 proteins in 1648 species: Archae - 51; Bacteria - 3420; Metazoa - 11813; Fungi - 6994; Plants - 9311; Viruses - 3; Other Eukaryotes - 1288 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR