F26918

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	desaturated green (PATO:0001272) (Rosette leaf::Color::pale) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	desaturated green (PATO:0001272) (Rosette leaf::Color::pale) dark green (PATO:0001249) (Rosette leaf::Color::dark)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26918

Determination of introduced cDNA(s)

RAFL09-27-A12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-27-A12 - Resource: pda08104

full reading [+] show sequence

TGATCCAAAG AGAAAACGTA TGAGTTGCTT AAACCATAAA CCTCAAGCTC 
AAAATTTTAT CAACCTTATA AAGTTTCGTT TTCTCGAGAT TTTGAATCTT 
TTCAGCTAAA AAAGATCACA GCTTTTTGCG TTTTCTGGAT GAGTTTGAGA 
TAAGAGAAGA TGAAGATTCA GTGTAACGTT TGTGAGGCGG CGGAAGCGAC 
GGTTCTATGT TGCGCCGACG AGGCTGCTCT TTGTTGGGCT TGCGATGAGA 
AAATTCACGC CGCTAATAAA CTCGCCGGAA AACATCAGAG AGTCCCTCTC 
TCTGCCTCTG CCTCTTCCAT ACCCAAATGT GACATTTGTC AGGAAGCATC 
TGGATTCTTC TTTTGTCTGC AAGATAGAGC TTTGCTATGT AGGAAATGTG 
ATGTTGCAAT CCACACTGTG AATCCTCATG TTTCAGCTCA CCAGAGATTT 
CTTCTCACTG GAATCAAAGT TGGTCTTGAA TCTATAGACA CTGGTCCTTC 
TACTAAATCC TCACCTACCA ATGATGATAA AACCATGGAG ACCAAACCTT 
TTGTTCAATC TATACCTGAG CCTCAAAAGA TGGCCTTCGA TCATCATCAT 
CACCAGCAGC AGCAGGAACA GCAGGAAGGA GTTATACCGG GAACTAAAGT 
CAATGATCAG ACATCGACAA AGCTTCCTCT CGTAAGTAGC GGATCAACTA 
CTGGAAGCAT TCCTCAGTGG CAAATAGAGG AGATTTTCGG GCTAACCGAC 
TTTGATCAGA GCTATGAATA CATGGAGAAT AATGGATCAT CTAAGGCGGA 
TACTAGTAGA CGAGGAGATT CAGACAGTTC TTCGATGATG AGATCTGCAG 
AAGAAGATGG AGAAGATAAC AATAACTGCT TGGGAGGTGA GACATCATGG 
GCGGTTCCAC AGATTCAGTC TCCACCTACA GCGTCTGGTC TAAACTGGCC 
TAAGCATTTT CACCACCACT CTGTGTTTGT TCCGGACATA ACTTCTTCAA 
CTCCTTATAC CGGTTCATCC CCGAATCAAA GGGTTGGGAA ACGGCGGCGA 
CGGTTCTAGC ATTTGTAATT ATCTTTTAGC CGCTTGAGAA AAGAGATTGG 
CAGCTTTCTC AGTAGATGTA AGATCACATA AATGATTTGG AAACTTGTAA 
TGTAGTGATC TGTGAGAGTC GGTGTTCTTT GTTAGCTGAA AAAACAAAAA 
GATGTTTATT TGGTTGAAGA TTATAAGGGG TTAAATTACT AAGTTATCAA 
TTTGG

Gene models with high sequence identity

AT1G78600.1 [+] show detail - light-regulated zinc finger protein 1
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Zinc finger, B-box	6.6e-13
HMMSmart	Zinc finger, B-box	3.8e-13
HMMPfam	Zinc finger, B-box	5.5e-05
HMMPfam	Zinc finger, B-box	8.2e-06
ProfileScan	Zinc finger, B-box	10.537
ProfileScan	Zinc finger, B-box	8.759

See the detailed result >

AT1G78600.1

Model type: Protein coding
Short Description: light-regulated zinc finger protein 1
Computational Description: light-regulated zinc finger protein 1 (LZF1); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT1G06040.1); Has 1826 Blast hits to 1364 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 1701; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
Link: InterPro Scan - TAIR